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Characterisation of a spumavirus Gag protein
Retrovirology volume 10, Article number: P3 (2013)
Human prototypic foamy virus (HPFV) belongs to the spumaretrovrinae subfamily and is an attractive vector candidate for gene therapy  as it is apathogenic. The Gag protein is not cleaved into matrix (MA), capsid (CA) and nucleocapsid (NC) as occurs in orthoretroviruses; rather, it is able to perform the roles of these proteins as a single polypeptide . Foamy virus Gag proteins are targets for restriction factors such as Trim5α  and also interact with the aminoterminal leader peptide of the envelope protein (Env). This Gag-Env interaction is essential for budding of viral particles from the host cell [4, 5].
Materials and methods
To investigate HPFV Gag assembly and Gag-Env interactions we have undertaken combined structural and biophysical studies using X-ray crystallography, NMR, multi-angle laser light scattering (MALLS) and analytical ultracentrifugation (AUC).
An N-terminal domain (NtD) of HPFV-Gag has been identified which is functionally related to CA and MA in other retroviruses despite very low sequence homology. Structural and solution studies of the HPFVGagNtD reveal that it forms a very stable homodimer which interacts through an extended coiled-coil region. A separate region of HPFV-Gag that exhibits a propensity for selfassociation has been identified and preliminary structural and biophysical analysis suggests that it is able to form homodimers with a dissociation constant of approximately 30 µM. The molecular basis of the Gag-Env interaction has been structurally characterised and mutagenic studies, both in vitro and in vivo, have revealed the importance of the individual residues involved in this interaction.
In stark contrast to orthoretroviral capsid which self-associates to form a predominantly hexameric lattice, the HPFV-Gag-NtD forms stable homodimers in solution. The identification of a secondary self-association region suggests that these dimers may undergo further multimerisation in the full-length Gag protein. Comparison of Trim5α specificity between foamy viruses suggests that the recognition site resides on the exposed surface of the N-terminal domain of the Gag protein.
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Goldstone, D.C., Flower, T.G., Ball, N.J. et al. Characterisation of a spumavirus Gag protein. Retrovirology 10, P3 (2013). https://doi.org/10.1186/1742-4690-10-S1-P3
- Leader Peptide
- Analytical Ultracentrifugation
- Foamy Virus
- Individual Residue
- Biophysical Study