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Solution structure of the equine infectious anemia virus p9 protein: a rationalization of its different ALIX binding requirements compared to the analogous HIV-p6 protein
Retrovirology volume 6, Article number: P93 (2009)
The equine infection anemia virus (EIAV) p9 Gag protein contains the late (L-) domain required for efficient virus release of nascent virions from the cell membrane of infected cells. The genomic position of p9 is analogous to that of the HIV-1 p6 protein and other similar proteins from different lentiviruses. Compared to HIV-1 p6, EIAV p9 has only minimal amino acid sequence homology and a considerable variation in the predicted secondary structure. Besides the function of p9 in viral DNA production and processing of the provirus , p9 plays, like p6 of HIV-1, an essential role in virus release, which is governed by late assembly domains (L-domains) [2–4].
In the present study the p9 protein and N- and C-terminal fragments (residues 1-21 and 22-51, respectively) were chemically synthesized and used for structural analyses. CD and 1H NMR spectroscopy provide the first molecular insight into the secondary structure and folding of this 51-amino acid protein under different solution conditions. Qualitative 1H chemical shift and NOE data indicate that in a pure aqueous environment p9 favors an unstructured state. In its most structured state under hydrophobic conditions, p9 adopts a stable helical structure within the C-terminus. Quantitative NOE data further revealed that this α-helix extends from Ser-27 to Ser-48, while the N-terminal residues remain unstructured. The structural elements identified for p9 differ substantially from that of the functional homologous HIV-1 p6 protein.
These structural differences are discussed in the context of the different types of L-domains regulating distinct cellular pathways in virus budding. EIAV p9 mediates virus release by recruiting the ALG2-interacting protein X (ALIX) via the YPDL-motif to the site of virus budding, the counterpart of the YPXnL-motif found in p6 [4, 5]. However, p6 contains an additional PTAP L-domain that promotes HIV-1 release by binding to the tumor susceptibility gene 101 (Tsg101) . The notion that structures found in p9 differ form that of p6 further support the idea that different mechanisms regulate binding of ALIX to primary versus secondary L-domains types.
Jin S, Chen C, Montelaro RC: Equine infectious anemia virus Gag p9 function in early steps of virus infection and provirus production. J Virol. 2005, 79: 8793-8801. 10.1128/JVI.79.14.8793-8801.2005.
Demirov DG, Freed EO: Retrovirus budding. Virus Res. 2004, 106: 87-102. 10.1016/j.virusres.2004.08.007.
Bieniasz PD: Late budding domains and host proteins in enveloped virus release. Virology. 2006, 344: 55-63. 10.1016/j.virol.2005.09.044.
Martin-Serrano J: The Role of Ubiquitin in Retroviral Egress. Traffic. 2007, 8: 1297-1303. 10.1111/j.1600-0854.2007.00609.x.
Williams RL, Urbe S: The emerging shape of the ESCRT machinery. Nat Rev Mol Cell Biol. 2007, 8: 355-368. 10.1038/nrm2162.
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Sharma, A., Bruns, K., Röder, R. et al. Solution structure of the equine infectious anemia virus p9 protein: a rationalization of its different ALIX binding requirements compared to the analogous HIV-p6 protein. Retrovirology 6 (Suppl 2), P93 (2009). https://doi.org/10.1186/1742-4690-6-S2-P93
- Equine Infectious Anemia Virus
- Virus Release
- Tumor Susceptibility Gene
- Nascent Virion
- Unstructured State