Table 1 Reference genome sequences of representative lentivirus species

Exogenous viruses

Jembrana disease virus

Gaur

Bos gaurus

JDV

NC_001654

Bovine immunodeficiency virus

Domestic cattle

Bos taurus

BIV

M32690

Small ruminant lentivirus genotype A

Goats & sheep

SRLV-A

NC_001452

Small ruminant lentivirus genotype B

Goats & sheep

SRLV-B

NC_001463

Equine infectious anemia virus

Domestic horse

Equus cabalus

EIAV

M16575

Feline immunodeficiency virus

Domestic cat

Felis catus

FIV-fca

M25381

Pallas’s cat

Otocolobus manul

FIV-oma

U56928

Puma

Puma concolor

FIV-pco

EF455613

Simian immunodeficiency virus

Spot-nosed monkeys

Cercopithecus nictitans

SIV-gsn

AF468659

Colobus monkey

Colobus guereza

SIV-col

AF301156

Sykes' monkey

Cercopithecus albogularis

SIV-syk

L06042

Dent's monkey

Cercopithecus denti

SIV-den

AJ580407

Drill monkey

Mandrillus leucophaeus

SIV-drl

AY159321

Green monkey

Chlorocebus sabaeus

SIV-agm-sab

U04005

Mangabey

Cercocebus torquatus

SIV-rcm

HM803689

Central chimpanzee

Pan troglodytes

SIV-cpz-ptt

AF103818

Sooty mangabey

Cercocebus atys atys

SIV-smm

X14307

Sun-tailed monkey

Cercopithecus solatus

SIV-sun

AF131870

Mandrill

Mandrillus sphinx

SIV-mnd-1

M27470

Human immunodeficiency virus 1*

Human

Homo sapiens

HIV-1

AF033819

Human immunodeficiency virus 2

Human

Homo sapiens

HIV-2A

X05291

Endogenous viruses

Rabbit endogenous lentivirus K

Leporids (rabbits & hares)

RELIK

[19]

Prosimian immunodeficiency virus 1

Mouse lemurs

PSIV1

[20]

Prosimian immunodeficiency virus 2

Dwarf lemurs

PSIV2

[21]

Mustelid endogenous lentivirus

Mustelids (subclade)

MELV

[22]

Dermopteran endogenous lentivirus

Colugos

DELV

[24]