Skip to main content
Fig. 1 | Retrovirology

Fig. 1

From: A large population sample of African HIV genomes from the 1980s reveals a reduction in subtype D over time associated with propensity for CXCR4 tropism

Fig. 1

Average read coverage across the genome for each genome assembly, and three example coverage plots of inter-subtype recombinant genomes from historical samples. Panel a gives the average coverage per genome assembly by subtype (with base 10 scale), which shows no significant difference between subtypes A1 and D, or between either subtype and the inter-subtype recombinants. Panel b shows the coverage plot of the inter-subtype recombinant with the highest average coverage (× 1769), panel c shows the only A1,C,D inter-subtype recombinant genome (average × 80), and d the lowest coverage inter-subtype recombinant (average × 27). The dotted horizontal lines show 5 × , 10 × and 50 × and the SCUEAL designated subtype and breakpoints are shown as schematic bars underneath each plot (subtype A1 in blue, D in orange, and C in red)

Back to article page

Retrovirology

ISSN: 1742-4690

Contact us