Gene | scRNA-seq (Fig. 7B–D) | Bulk RNA-seq DDE (Fig. 3B, C) | Gene function | References | |
---|---|---|---|---|---|
GBP1 | Suppressed in vRNAhi & vRNAlo cells* | Not significant | Not tested | Inhibits viral glycoproteins | |
IFIT1 | Not significant | Suppressed in JLat9.2* | Suppressed in JLat9.2* | Inhibits viral RNA expression | [68] |
IFIT2 | Not significant | Suppressed in JLat9.2* | suppressed in JLat9.2* | Inhibits viral RNA expression | [68] |
IFITM1 | Suppressed in vRNAhi & vRNAlo cells* | Suppressed in JLat9.2* | Suppressed in all latent cell lines* and RGH latent cells* | Blocks viral fusion and release | [15] [101] [20] |
IFITM2 | Suppressed in vRNAhi & vRNAlo cells* | Not significant | Not tested | Inhibits viral entry & induces apoptosis | [15] [101] [20] |
IFITM3 | Suppressed in vRNAhi & vRNAlo cells* | Suppressed in JLat9.2* | Not tested | Inhibits viral entry | [15] [101] [20] |
ISG15 | Not significant | Suppressed in JLat9.2* | Suppressed in JLat9.2* and ACH2 cells | Isgylates antiviral proteins to enhance/inhibit activity; antiviral activity against many viruses | [18] [20] [51] |
MT2A | Suppressed in vRNAhi & vRNAlo cells* | Suppressed in JLat9.2* | Not tested | Anti-oxidant; regulates intracellular heavy metals; regulates apoptosis | [49] |
MX1 | Not significant | Suppressed in JLat9.2* | Suppressed in JLat9.2* and JLat11.1* | binding/inactivation of viral ribonucleocapsid | [20] |
OAS1 | Not significant | Suppressed in JLat9.2* | Suppressed in all latent cell lines* and RGH latent cells* | Activates Rnase L to degrade viral RNA | [20] |
RPL5 | Suppressed in vRNAhi & vRNAlo cells* | Not significant | Not tested | Ribosome component; binds 5S RNA | [69] |
RSAD2 (viperin) | Not significant | Suppressed in JLat9.2* | Not tested | Inhibits viral RNA replication; binds viral proteins; dysregulates lipid metabolism | [21] |
STAT1 | Downregulated in resting vRNAhi & vRNAlo cells* | Suppressed in JLat9.2* | Not tested | Critical IFN signaling effector in JAK/STAT pathway; inhibits NF-κB; potentiates TNF⍺-mediated apoptosis |