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Table 1 A comparison of intactness inference in the NCI PSD [20] with results from HIVIntact

From: HIVIntact: a python-based tool for HIV-1 genome intactness inference

 

Inferred intactness in the PSD

1. Reported intactness by HIVIntact (excluding small ORFs)

2. Reported intactness by HIVIntact (including small ORFs)

Intact

624

623

581

Defective

3519

3520

3562

Uniquely intact

3

2

2

  1. The table reports how many sequences were called intact and defective in total in the PSD, as compared against HIVIntact in two modes: (1) assessing only the three major ORFs (gag, pol, env) and (2) including intactness checks for the 6 smaller ORFs (vif, vpr, tat, rev, vpu, nef). The table also reports how many sequences were called intact uniquely by only one tool, indicating a disagreement in intactness inference
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Retrovirology

ISSN: 1742-4690

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