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Table 4 Divergence aggregated by class, linkage, CpG censoring, and differences used. Differences used were classified as: all differences (EQ+/−); CG equilibrating differences only (EQ+); and non CG equilibrating differences only (EQ-). Sites were classified as one of: ERV (PV); selfish DNA (RM+); or non-repetitive or repetitive but non-selfish (RM-)

From: Orthologous endogenous retroviruses exhibit directional selection since the chimp-human split

   Uncensored (CpG+) Censored (CpG-)
Linkage Class EQ+/− EQ+ EQ- EQ+/− EQ+ EQ-
A PV 0.01649 0.01430 0.00222 0.01066 0.00885 0.00182
A RM+ 0.01446 0.01230 0.00217 0.01017 0.00831 0.00187
A RM- 0.01144 0.00969 0.00177 0.00865 0.00712 0.00154
X PV 0.01365 0.01182 0.00184 0.00829 0.00694 0.00135
X RM+ 0.01087 0.00929 0.00159 0.00776 0.00639 0.00137
X RM- 0.01005 0.00841 0.00166 0.00767 0.00627 0.00140