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Figure 5 | Retrovirology

Figure 5

From: HIV-1 subtype distribution in the Gambia and the significant presence of CRF49_cpx, a novel circulating recombinant form

Figure 5

Recombinant map of CRF49_cpx and phylogenetic trees constructed from each non-recombinant fragment. Recombinant map of CRF49_cpx (top) drawn using the Recombinant HIV-1 Drawing Tool at LAHDB and depicting HXB2 numbering at breakpoints estimated via bootscan analysis in Simplot [22]. Below are maximum likelihood trees constructed with each non-recombinant fragment (1 to 8) showing the relationship to pure subtypes. Only bootstrap values (from 1000 replications using the neighbour-joining method) at relevant nodes to the CRF49_cpx isolates and closest pure subtype are shown for ease of presentation.

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