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Table 2 Intragenic recombination events.

From: Multiple-infection and recombination in HIV-1 within a longitudinal cohort of women

IDU

Multiple Infected

Gene

No. Ind.

No. of Intrastrain Recombinants

No. of Interstrain Recombinants

Rate of Intrastrain Recombination/Ind.

Rate of Interstrain Recombination/Ind.

Total rate of Recombi-nation

No

No

pol

27

4

 

0.148

 

0.148

No

No

env

28

28

 

1.000

 

1.000

No

Yes

pol

11

5

1

0.455

0.091

0.455

No

Yes

env

10

7

0

0.700

0.000

0.700

Yes

No

pol

7

4

 

0.571

 

0.571

Yes

No

env

7

21

 

3.000

 

3.000

Yes

Yes

pol

12

5

1

0.417

0.083

0.500

Yes

Yes

env

12

4

3

0.333

0.250

0.58

  1. Numbers of confirmed intragenic recombination events detected are subdivided as a function of the IDU status, superinfection status, and gene sequenced. Recombination events are further divided into those between viruses from the same monophyletic strain within a subject versus those that occurred between strains in superinfected individuals.