Skip to main content

Table 3 Calculation of the PFV TS rate.

From: Accuracy estimation of foamy virus genome copying

 

Column 1

Column 2

Column 3

Column 4

Column 5

Column 6

Column 7

Selection Medium

Neo + Hygro

Neo

Hygro

TS Phenotype

NON-TS Phenotype (Neo)

NON-TS Phenotype (Hygro)

TS rate per 1 kb

Experiment 1

3,200

7,000

21,000

6,400

3,800

17,800

22.9%

Experiment 2

4,300

16,500

22,500

8,600

12,200

18,200

22.1%

Experiment 3

600

4,100

1,400

1,200

3,500

800

21.8%

average

      

22.3%

  1. KG81 and KG82 (Fig. 2A) were combined and packaged in 293T cells. Recipient HEK 293 cells were transduced with vector preparations and cells were grown on culture plates supplemented with either neomycin, hygromycin, or both. Colonies were quantified. Column1: number of colonies counted on plates with Neomycin and Hygromycin; column 2: number of colonies counted on plates with Neomycin; column 3: number of colonies counted on plates with Hygromycin; column 4: TS phenotypes (including the double sensitive phenotype that does not grow on the double antibiotics plate) calculated as 2× column 1 (e.g. 2 × 3,200 = 6,400); column 5: Non-TS phenotypes (NeoR, HygroS) calculated as column 2 - column 1 (e.g. 7,000 - 3,200 = 3,800); column 6: Non-TS phenotypes (NeoS, HygroR) calculated as column 3 - column 1 (e.g. 21,000 - 3,200 = 17,800); column 7: TS rate within 1 kb fragment calculated as 100×(column 4/[column 4 + column 5 + column 6]) (e.g. 100 × (6400/[6400+3800+1780]) = 22.9%).