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Table 1 Primers utilized in these experiments

From: Impaired RNA incorporation and dimerization in live attenuated leader-variants of SIVmac239

Name Sequence Locationa
pUΔ39 5'-gtcggtacca/caggtaagtgcaacac-3' +1189-1254
pUΔ33 5'-gtcggtacca/cggttgcaggtaagtgc-3' +1189-1249
pUΔ19 5'-gtcggtacca/gaggaagaggcctccggttgc-3' + 1189-1238
pUΔ14 5'-gcacttacctgcaaccg/tcccgctcctcacgcc-3' +1216-1254
pUΔ6 5'-gtgttgcacttacctg/gaggcctcttcctctcc-3' +1203-1249
pDΔ60 5'-ggagtttctcacgcccatct/cttacctgcaaccggag-3' +1230-1326
pDΔ51 5'-ggagtttctcacgcccatctc/gtgttgcacttacctgc-3' +1238-1326
pDΔ12 5'-cccttcctggataaaagacagc/gtgttgcacttacctgc-3' +1238-1288
pDΔ19 5'-ggagtttctcacgcccatctc/cttcctggataaaagacagc-3' +1267-1326
pDΔ20 5'-ccactctatcttattaccc/tatttcttttttgtgttgcacttacctgcaac-3' +1229-1305
pDΔ8 5'-cctggataaaagacagctatttctttttt/cttacctgcaaccggagg-3' +1226-1283
Sgag1 5'-gcaaccccagttggatccatctcctgt-3' +1348-1322
su5 5'-aagctagtgtgtgttcccatctc-3' +175-197
Senf 5'-ggcttgagctcactctcttgtgag-3' +8705-8728
Sg 5'-cttccctgacaagacggag-3' +567-549
sg1 5'-gaagcatgtagtatgggcag-3' +627-646
sg2 5'-ggcactaatggagctaagaccg-3' +746-725
su3 5'-ccggaagggatttattacagtg-3' -518-497
su3-1 5'-ggctggctatggaaattagtccc-3' -390-367
  1. a Location of the primer is relative to the transcription initiation site (+1)