Table 2 Nucleotide and amino acid distances of the NC and p6 sequences from mother sets, infant sets, and between mother-infant pairs.
From: Molecular characterization of the HIV-1 gagnucleocapsid gene associated with vertical transmission
Nucleotide Distances | |||||||||
|---|---|---|---|---|---|---|---|---|---|
Pair | Within Mother | Within Infant | Between Mother and Infant | ||||||
| Â | Min | Med | Max | Min | Med | Max | Min | Med | Max |
B | 0 | 0.26 | 0.80 | 0 | 0 | 0.80 | 0 | 0 | 1.10 |
C | 0 | 0.53 | 2.12 | 0 | 2.26 | 3.77 | 0 | 2.94 | 5.44 |
D | 0 | 0.84 | 2.03 | 0 | 0.88 | 2.57 | 0 | 1.13 | 3.18 |
E | 0 | 1.13 | 2.37 | 0 | 1.11 | 2.39 | 0 | 1.12 | 2.68 |
F | 0 | 0.27 | 1.62 | 0 | 1.78 | 3.70 | 0 | 1.99 | 4.82 |
H | 0 | 1.89 | 6.30 | - | - | - | 0 | 1.62 | 6.28 |
I1H | - | - | - | 0 | 0 | 0.27 | - | - | - |
I2H | - | - | - | 0 | 3.22 | 5.03 | - | - | - |
Total | 0 | 0.53 | 6.30 | 0 | 1.16 | 5.03 | 0 | 1.38 | 6.28 |
Amino Acid Distances | |||||||||
Pair | Within Mother | Within Infant | Between Mother and Infant | ||||||
| Â | Min | Med | Max | Min | Med | Max | Min | Med | Max |
B | 0 | 0 | 4.12 | 0 | 0 | 1.63 | 0 | 0 | 4.12 |
C | 0 | 0.8 | 4.89 | 0 | 4.05 | 7.49 | 0 | 5.74 | 14.55 |
D | 0 | 0.81 | 4.12 | 0 | 1.63 | 4.12 | 0 | 1.63 | 5.87 |
E | 0 | 2.47 | 6.74 | 0 | 1.63 | 4.97 | 0 | 2.47 | 6.74 |
F | 0 | 0.81 | 3.28 | 0 | 2.45 | 5.82 | 0 | 3.28 | 8.43 |
H | 0 | 4.12 | 13.05 | - | - | - | 0 | 3.28 | 13.05 |
I1H | - | - | - | 0 | 0 | 0 | - | - | - |
I2H | - | - | - | 0 | 2.04 | 9.31 | - | - | - |
Total | 0 | 0.81 | 13.05 | 0 | 1.63 | 9.31 | 0 | 2.45 | 14.55 |