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Table 3 The integrity of 6 separate regions relative to the corresponding sections of reference

From: Comprehensive identification and characterization of the HERV-K (HML-9) group in the human genome

Number

Locus

Provirus regions

5′LTR (%)

gag (%)

pro (%)

pol (%)

env (%)

3′LTR (%)

1

16p12.3

chr16 19393581 19402152

100.00

99.83

99.89

99.39

99.17

99.66

2

2p12

chr2 82022660 82031279

98.98

99.72

99.89

99.43

99.90

99.15

3

15q21.1

chr15 45234477 45243073

99.83

99.27

100.00

99.66

99.56

99.83

4

8p11.1

chr8 43694016 43702583

99.83

99.44

98.31

99.39

99.66

99.83

5

13q31.1

chr13 84869526 84877320

35.78

99.55

52.20

99.77

99.80

99.32

6

4q33

chr4 170126345 170133883

99.66

99.89

99.77

99.70

13.93

0.00

7

6p12.3

chr6 48873675 48879725

99.15

92.79

65.84

6.13

99.85

99.66

8

Yp11.2

chrY 9273707 9279611

88.42

90.73

63.81

6.36

98.83

99.49

9

8q24.3

chr8 145019974 145032719

0.00

0.00

0.79

99.77

99.90

95.23

10

Yq11.223

chrY 21580120 21585551

88.25

91.74

64.83

6.25

99.36

15.84

11

19q13.2

chr19 40954172 40959178

98.98

98.94

64.26

6.17

67.40

77.51

12

Yp11.2

chrY 8121821 8126768

99.66

76.49

14.09

6.40

99.17

98.81

13

Yp11.2

chrY 8996062 9000755

0.00

80.23

64.37

6.47

99.80

95.55

14

Yq11.222

chrY 18622534 18626952

96.76

75.21

0.00

0.00

84.75

98.47

15

Yq11.223

chrY 21845475 21850069

0.00

70.85

64.60

6.40

99.32

99.15

16

21q21.1

chr21 18563368 18566735

0.00

0.00

95.26

96.12

0.00

0.00

17

5q33.3

chr5 156660448 156663815

0.00

0.00

95.26

96.12

0.00

0.00

18

1q22

chr1 155629408 155632775

0.00

0.00

95.26

96.12

0.00

0.00

19

7q36.1

chr7 150561277 150563994

0.00

0.00

0.00

16.91

99.02

54.51

20

8q21.13

chr8 78652302 78654820

0.00

0.00

0.00

0.00

87.34

100.00

21

10q24.2

chr10 99822511 99825532

0.00

0.00

52.29

95.43

0.00

0.00

22

12q13.11

chr12 48509228 48511681

0.00

0.00

88.72

63.52

0.00

0.00

23

Yq11.222

chrY 17669948 17671523

52.81

62.09

0.00

0.00

0.00

0.00