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Table 2 Novel HERV-K (HML-2) integration loci

From: Identification of the distribution of human endogenous retroviruses K (HML-2) by PCR-based target enrichment sequencing

LocusCoordinateOrientationTypeFlanking region
Reference HERV-K (HML-2) integration loci
 solo-1p35.1Chr1: 33529117-33530085(+)LTR5_Hs
 solo-3p12.3Chr3: 75586870-75587898(+)LTR5A1.3 kb upstream of CTD-2023G6.3
 solo-3q21.2Chr3: 125518094-125519118(−)LTR5A1.3 kb downstream of LOC105374312
 solo-4p16.3Chr4: 4076017-4077040(+)LTR5ABC042823 (exon5/5)
 solo-4p16.1aChr4: 9036143-9037177(−)LTR5A
 solo-4p16.1bChr4: 9568938-9569963(−)LTR5AAF073924 (intron 13/41)
 solo-6p22.2Chr6: 25999459-26000425(+)LTR5_HsU91328.19 (exon 2/2)
 solo-7p14.3Chr7: 30758200-30759205(−)LTR5BINMT (intron 1/3)
 solo-8p23.1aChr8: 12481601-12482613(+)LTR5ALOC729732 (intron 2/5)
 solo-8p23.1bChr8: 6984509-6985529(−)LTR5A
 solo-8p23.1cChr8: 7957620-7958646(−)LTR5AFAM85B (exon 4/4)
 solo-8p12Chr8: 29976041-29976903(−)LTR5BLEPROTL1 transcript variant 2 (intron3/3)
 solo-10q24.1Chr10: 99176602-99177875(−)LTR5_Hs0.6 kb upstream of LOC644215, with Alu int
 solo-11q12.2Chr11: 60480658-60481952(−)LTR5_HsMS4A8 (intron5/6), with Alu int
 solo-11p15.4aChr11: 3566582-3567605(+)LTR5ALOC101927708 (intron1/2)
 solo-11p15.4bChr11: 4481698-4482706(−)LTR5B
 solo-12q23.3Chr12: 108220231-108221198(−)LTR5_HsKJ893228 (coding PRDM4) (intron 4/13)
 solo-16q23.1Chr16: 75848903-75850194(−)LTR5_Hswith Alu int
 solo-19q13.41Chr19: 53435868-53437508(−)LTR5BZNF321P (intron1/1), with Alu int
 solo-19p12Chr19: 23459830-23461346(−)LTR5Bwith LTR6A int
 solo-20p11.21aChr20: 23736917-23737884(−)LTR5_Hs 
 solo-20p11.21bChr20: 23674997-23675964(−)LTR5_Hs 
 solo-Yq11.223ChrY: 26026513-26027237(−)LTR5_Hs
 solo-Yq11.23ChrY: 27935164-27935888(+)LTR5_Hs
 solo-Un212Un_gl000212: 79707-80671(+)LTR5_Hs
 solo-Un219Un_gl000219: 31165-32127(−)LTR5_Hs
 solo-Un222Un_gl000222: 107341-108304(−)LTR5_Hs
 solo-Un231Un_gl000231: 22479-23506(+)LTR5A
 solo-Un232aUn_gl000232: 2327-3289(+)LTR5_Hs
 solo-Un232bUn_gl000232: 8571-9521(−)LTR5_Hs
Non-reference HERV-K (HML-2) integration loci
 N3q22.1Chr3: 130166557-130166563(+) HERVK11-int, COL6A5 (intron 36/41)
 N6p21.32Chr6: 32643459-32643464(+)LTR5_HsL1PA10
 N15q21.2Chr15: 51650823-51650829(+) HERV17-int, GLDN (intron 1/9)
 N19q11Chr19: 28198583-28198588(+) inserted into HERV17-int
 N21q22.11Chr21: 33824215-33824220(−) MLT1C, EVA1c (intron 1/7)