Assessment of the gorilla gut virome in association with natural simian immunodeficiency virus infection

D’arc, Mirela; Furtado, Carolina; Siqueira, Juliana D.; Seuánez, Héctor N.; Ayouba, Ahidjo; Peeters, Martine; Soares, Marcelo A.

doi:10.1186/s12977-018-0402-9

Retrovirology

Table 1 Description of noninvasive samples used in this study

From: Assessment of the gorilla gut virome in association with natural simian immunodeficiency virus infection

Lab code	ID^a	Collection date (dd/mm/yyyy)	Estimated freshness (h)	SIV-specific RT-PCR^b	SIVgor VL (cp/mL)^c	SIV serology	GPS coordinates
CP3376	CPg-ID046	12/05/2008	11	NA	NA	NEG	2.334617°N 10.191633°W
CP3385	CPg-ID059	12/05/2008	11	NA	NA	NEG	2.334617°N 10.191633°W
CP3403	CPg-ID030	12/05/2008	ND	gp41/polmini	45	POS	2.334444°N 10.183889°W
CP3409	CPg-ID031	12/05/2008	10	NEG	20	POS	2.33055°N 10.201833°W
CP3453	CPg-ID090	12/10/2008	22	NA	NA	NEG	2.34425°N 10.229833°W
CP3469	CPg-ID034	12/10/2008	ND	gp41	4.217	POS	2.341389°N 10.211389°W
CP5781	CPg-ID066	27/04/2010	14	gp41	1.095	POS	2.325°N 10.1781°W
CP5819	CPg-ID017	30/04/2010	6	NA	NA	NEG	2.32865°N 10.168633°W
CP6535	CPg-ID142	17/03/2011	8	NA	NEG	NEG	2.34647°N 10.28754°W
CP7880	CPg-ID086	27/01/2012	12	NA	NEG	NEG	2.34329°N 10.18654°W
CP7885	CPg-ID004	27/01/2012	12	gp41	655	POS	2.34329°N 10.18654°W
CP7890	CPg-ID005	27/01/2012	12	gp41	2.346	POS	2.34329°N 10.18654°W
CP8084	CPg-ID006	23/04/2012	24	gp41	1.242	POS	2.32763°N 10.18388°W
CP8789	CPg-ID074^d	12/11/2012	12	gp41/gp120 (V1–V4)	31.497	POS	2.34434°N 10.25066°W
CP8797	CPg-ID021	12/11/2012	12	NA	NEG	NEG	2.34434°N 10.25066°W
CP8804	CPg-ID114	12/11/2012	8	NA	NEG	NEG	2.34362°N 10.25137°W
CP9667	CPg-ID041	13/07/2013	14	gp41/polmini	2.460	POS	2.32650°N 10.20193°W
CP9679	CPg-ID035	13/07/2013	6	polmini	700	POS	2.32650°N 10.20193°W
CP9683	CPg-ID108	13/07/2013	6	NA	NA	NEG	2.32650°N 10.20193°W
CP9686	CPg-ID102	13/07/2013	6	NA	NA	NEG	2.32650°N 10.20193°W
CP9725	CPg-ID074^d	27/10/2013	12	gp41/gp120/polmini	4.924	POS	2.31423°N 10.19226°W
CP9852	CPg-ID122	19/02/2014	2	NA	NA	NEG	2.31021°N 10.24563°W
CP9854	CPg-ID047	19/02/2014	6	NEG	980	POS	2.31021°N 10.24563°W

ND not done, NA not applicable, POS positive, NEG negative
^aSamples individualized (ID) by microsatellite analysis [2, 20, 21]
^bSIV-specific RT-PCR using primers CPZ-gp41 (~ 450 bp), polmini (280 bp) and gp120 V1–V4 (~ 1000 bp), as previously described [1, 21, 22, 24]
^cViral Load (VL), as previously described [23]
^dSamples of the same individual

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ISSN: 1742-4690

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