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Table 1 Description of noninvasive samples used in this study

From: Assessment of the gorilla gut virome in association with natural simian immunodeficiency virus infection

Lab code IDa Collection date (dd/mm/yyyy) Estimated freshness (h) SIV-specific RT-PCRb SIVgor VL (cp/mL)c SIV serology GPS coordinates
CP3376 CPg-ID046 12/05/2008 11 NA NA NEG 2.334617°N 10.191633°W
CP3385 CPg-ID059 12/05/2008 11 NA NA NEG 2.334617°N 10.191633°W
CP3403 CPg-ID030 12/05/2008 ND gp41/polmini 45 POS 2.334444°N 10.183889°W
CP3409 CPg-ID031 12/05/2008 10 NEG 20 POS 2.33055°N 10.201833°W
CP3453 CPg-ID090 12/10/2008 22 NA NA NEG 2.34425°N 10.229833°W
CP3469 CPg-ID034 12/10/2008 ND gp41 4.217 POS 2.341389°N 10.211389°W
CP5781 CPg-ID066 27/04/2010 14 gp41 1.095 POS 2.325°N
10.1781°W
CP5819 CPg-ID017 30/04/2010 6 NA NA NEG 2.32865°N 10.168633°W
CP6535 CPg-ID142 17/03/2011 8 NA NEG NEG 2.34647°N 10.28754°W
CP7880 CPg-ID086 27/01/2012 12 NA NEG NEG 2.34329°N 10.18654°W
CP7885 CPg-ID004 27/01/2012 12 gp41 655 POS 2.34329°N 10.18654°W
CP7890 CPg-ID005 27/01/2012 12 gp41 2.346 POS 2.34329°N 10.18654°W
CP8084 CPg-ID006 23/04/2012 24 gp41 1.242 POS 2.32763°N 10.18388°W
CP8789 CPg-ID074d 12/11/2012 12 gp41/gp120 (V1–V4) 31.497 POS 2.34434°N 10.25066°W
CP8797 CPg-ID021 12/11/2012 12 NA NEG NEG 2.34434°N 10.25066°W
CP8804 CPg-ID114 12/11/2012 8 NA NEG NEG 2.34362°N 10.25137°W
CP9667 CPg-ID041 13/07/2013 14 gp41/polmini 2.460 POS 2.32650°N 10.20193°W
CP9679 CPg-ID035 13/07/2013 6 polmini 700 POS 2.32650°N 10.20193°W
CP9683 CPg-ID108 13/07/2013 6 NA NA NEG 2.32650°N 10.20193°W
CP9686 CPg-ID102 13/07/2013 6 NA NA NEG 2.32650°N 10.20193°W
CP9725 CPg-ID074d 27/10/2013 12 gp41/gp120/polmini 4.924 POS 2.31423°N 10.19226°W
CP9852 CPg-ID122 19/02/2014 2 NA NA NEG 2.31021°N 10.24563°W
CP9854 CPg-ID047 19/02/2014 6 NEG 980 POS 2.31021°N 10.24563°W
  1. ND not done, NA not applicable, POS positive, NEG negative
  2. aSamples individualized (ID) by microsatellite analysis [2, 20, 21]
  3. bSIV-specific RT-PCR using primers CPZ-gp41 (~ 450 bp), polmini (280 bp) and gp120 V1–V4 (~ 1000 bp), as previously described [1, 21, 22, 24]
  4. cViral Load (VL), as previously described [23]
  5. dSamples of the same individual