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Fig. 3 | Retrovirology

Fig. 3

From: Computational analysis of envelope glycoproteins from diverse geographical isolates of bovine leukemia virus identifies highly conserved peptide motifs

Fig. 3

Distribution of segments along the surface glycoprotein gp51. The labeled green bars in the upper part of figure refer to the coding sequences of antigenic determinants and to the Zinc-binding peptide. MEME motifs obtained by the initial MEME analysis with a motif width range set at 5–20 amino acids are indicated by blue (A–F) and red (G–K) bars above the consensus sequence. MEME motifs I–VI defined in the second MEME analysis using a motif width range of 20–33 amino acids are indicated by purple bars. Epitopes B, B′, E, and E′ (linear), G, H and F (conformational), ND1, 2, and 3 (neutralization domains), and B-cell and T-cell determinants are indicated by green bars. Previously reported conserved functional sequence segments and the putative proline rich region are indicated by yellow bars above the sequence. The sequence of mature gp51 is shown. Nucleotides are numbered based on their position in the coding sequence of the envelope protein beginning with the “A” nucleotide of the start codon

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