Skip to main content

Table 1 HIV-1NL4-3 genomic RNA mononucleotide and dinucleotide frequencies

From: Increasing the CpG dinucleotide abundance in the HIV-1 genomic RNA inhibits viral replication

Base # Freq. % Obs./Exp.
Mononucleotide frequencies
 A 3281 0.358 35.8 1.43
 C 1635 0.178 17.8 0.71
 G 2216 0.242 24.2 0.97
 T 2041 0.223 22.3 0.89
 G + C 3851 0.420 42.0 0.84
 A + T 5322 0.580 58.0 1.16
Total positions = 9173
Base # Freq. % Obs./Exp.
Dinucleotide frequencies
 AA 1093 0.119 11.9 0.93
 AC 522 0.057 5.7 0.89
 AG 962 0.105 10.5 1.21
 AT 703 0.077 7.7 0.96
 CA 758 0.083 8.3 1.30
 CC 371 0.040 4.0 1.27
 CG 82 0.009 0.9 0.21
 CT 424 0.046 4.6 1.17
 GA 762 0.083 8.3 0.96
 GC 424 0.046 4.6 1.07
 GG 625 0.068 6.8 1.17
 GT 405 0.044 4.4 0.82
 TA 668 0.073 7.3 0.92
 TC 318 0.035 3.5 0.87
 TG 546 0.060 6.0 1.11
 TT 509 0.055 5.5 1.12
Total positions = 9172