From: Increasing the CpG dinucleotide abundance in the HIV-1 genomic RNA inhibits viral replication
Base | # | Freq. | % | Obs./Exp. |
---|---|---|---|---|
Mononucleotide frequencies | ||||
 A | 3281 | 0.358 | 35.8 | 1.43 |
 C | 1635 | 0.178 | 17.8 | 0.71 |
 G | 2216 | 0.242 | 24.2 | 0.97 |
 T | 2041 | 0.223 | 22.3 | 0.89 |
 G + C | 3851 | 0.420 | 42.0 | 0.84 |
 A + T | 5322 | 0.580 | 58.0 | 1.16 |
Total positions = 9173 |
Base | # | Freq. | % | Obs./Exp. |
---|---|---|---|---|
Dinucleotide frequencies | ||||
 AA | 1093 | 0.119 | 11.9 | 0.93 |
 AC | 522 | 0.057 | 5.7 | 0.89 |
 AG | 962 | 0.105 | 10.5 | 1.21 |
 AT | 703 | 0.077 | 7.7 | 0.96 |
 CA | 758 | 0.083 | 8.3 | 1.30 |
 CC | 371 | 0.040 | 4.0 | 1.27 |
 CG | 82 | 0.009 | 0.9 | 0.21 |
 CT | 424 | 0.046 | 4.6 | 1.17 |
 GA | 762 | 0.083 | 8.3 | 0.96 |
 GC | 424 | 0.046 | 4.6 | 1.07 |
 GG | 625 | 0.068 | 6.8 | 1.17 |
 GT | 405 | 0.044 | 4.4 | 0.82 |
 TA | 668 | 0.073 | 7.3 | 0.92 |
 TC | 318 | 0.035 | 3.5 | 0.87 |
 TG | 546 | 0.060 | 6.0 | 1.11 |
 TT | 509 | 0.055 | 5.5 | 1.12 |
Total positions = 9172 |