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Table 1 HIV-1NL4-3 genomic RNA mononucleotide and dinucleotide frequencies

From: Increasing the CpG dinucleotide abundance in the HIV-1 genomic RNA inhibits viral replication

Base

#

Freq.

%

Obs./Exp.

Mononucleotide frequencies

 A

3281

0.358

35.8

1.43

 C

1635

0.178

17.8

0.71

 G

2216

0.242

24.2

0.97

 T

2041

0.223

22.3

0.89

 G + C

3851

0.420

42.0

0.84

 A + T

5322

0.580

58.0

1.16

Total positions = 9173

Base

#

Freq.

%

Obs./Exp.

Dinucleotide frequencies

 AA

1093

0.119

11.9

0.93

 AC

522

0.057

5.7

0.89

 AG

962

0.105

10.5

1.21

 AT

703

0.077

7.7

0.96

 CA

758

0.083

8.3

1.30

 CC

371

0.040

4.0

1.27

 CG

82

0.009

0.9

0.21

 CT

424

0.046

4.6

1.17

 GA

762

0.083

8.3

0.96

 GC

424

0.046

4.6

1.07

 GG

625

0.068

6.8

1.17

 GT

405

0.044

4.4

0.82

 TA

668

0.073

7.3

0.92

 TC

318

0.035

3.5

0.87

 TG

546

0.060

6.0

1.11

 TT

509

0.055

5.5

1.12

Total positions = 9172