From: HIV integration sites in latently infected cell lines: evidence of ongoing replication
Cell line | Replication competent virus | Chromosomea | Positionb | Genec | Gene orientationd | HIV orientatione | Percentage of eventsf |
---|---|---|---|---|---|---|---|
U1 | Yes | 2 | 48,177,527 | AC079807.4 | − | + | ≈38% |
 |  | X | 38,811,467 |  |  | − | ≈55% |
 |  | 19 | 34,452,847 | UBA2 | + | + | ≈3% |
ACH-2 | Yes | 7 | 33,019,791 | NT5C3A | − | − | ≈37% |
 |  | 9 | 128,111,651 | SLC25A25-AS | − | − | ≈13% |
 |  | 2 | 26,386,668 | EPT1 | + | + | ≈2% |
 |  | 17 | 81,558,479 | NPLOC4 | + | − | ≈1% |
J1.1 | Yes | 11 | 685,243 | DEAF1 | − | − | ≈41% |
 |  | 12 | 54,257,973 | CBX5 | − | − | ≈38% |
J-Lat 8.4 | No | 1 | 7,946,384 | FUBP1 | − | − | 100% |
J-Lat 9.2 | No | 19 | 4,381,104 | PPP5C | + | + | 100% |
J-Lat 10.6 | No | 9 | 136,468,579 | SEC16A | − | + | 100% |
J-Lat 15.4 | No | 19 | 34,441,293 | UBA2 | + | + | 100% |
J-Lat tat-GFP 8.2 | No | 10 | 39,936,068 | Â | Â | + | 100% |
J-Lat tat-GFP A1 | No | X | 34,073,326 |  |  | − | 100% |
J-Lat tat-GFP H2 | No | 2 | 171,821,429 | SLC25A12 | − | + | 100% |
J-Lat tat-GFP A72 | No | X | 45,038,538 | KDM6A | + | − | 100% |