|
Samples
|
Sample collection date
|
Protease
|
RT
|
Integrase
|
Envelope
|
HIV-1/O
|
HIV-1/M
|
vpr
|
|---|
|
Subgroupa
|
Subtype
|
HIV-1/O
|
HIV-1/M
|
HIV-1/MO
|
HIV-1/OM
|
|---|
|
YBF221
|
10/19/2006
|
M + O
|
M + O
|
M + O
|
M + O
|
H
|
CRF02
|
+
|
+
|
−
|
−
|
|
YBF280
|
NA
|
M + O
|
M + O
|
M + O
|
M + O
|
T
|
CRF02
|
+
|
+
|
−
|
−
|
|
YBF301b
|
10/16/2007
|
M + O
|
M + O
|
M + O
|
M + O
|
H
|
CRF02
|
+
|
+
|
−
|
−
|
|
YBF320b
|
NA
|
M + O
|
M + O
|
M + O
|
M + O
|
H
|
CRF02
|
+
|
+
|
−
|
−
|
|
YBF211b
|
05/04/2009
|
M + O
|
M + O
|
M + O
|
M + O
|
H
|
CRF02
|
+
|
+
|
−
|
+
|
|
YBF212b
|
12/11/2006
|
M + O
|
M + O
|
M + O
|
M + O
|
H
|
CRF02
|
+
|
+
|
−
|
+
|
|
YBF205b
|
09/13/2007
|
M + O
|
O
|
M + O
|
M + O
|
H
|
NT
|
+
|
−
|
−
|
+
|
|
YBF274
|
05/14/2008
|
O
|
O
|
O
|
M + O
|
H
|
D
|
+
|
−
|
−
|
+
|
|
YBF298b
|
11/06/2007
|
M
|
M
|
M
|
M + O
|
H
|
CRF02
|
−
|
+
|
+
|
−
|
|
YBF282
|
04/07/2007
|
M
|
M
|
M
|
O
|
H
|
CRF02
|
−
|
+
|
−
|
−
|
-
NT non typable, NA not available
-
aAccording to classification described by Leoz & al PLoS Pathog, 2015 (16)
-
bAmplification and sequencing of DNA from buffy coat
