Table 6 HERV-W loci homology of previously described MSRV sequences and probes
MSRV GenBank entry | HERV-W locus/loci | Query cover | n° of discordant bases | Mapped portion in LTR17-HERV17-LTR17 |
|---|---|---|---|---|
AF127227 (544 bp) | 3q23a* (99.5 %) | 1–544 | 3 | env (8208–8752) |
AF127228 (1932 bp) | Xq22.3b* (99.6 %) | 1–1932 | 9 | pol-env (5444–5838 and 7682–9200) |
AF127229 (2004 bp) | 3p12.3* (99.9 %) | 1–1084 | 2 | pol-env-3′ LTR (5452–6792 and 8290–8318 and 9115–9732) |
18q21.32* (99.9 %) | 1055–2004 | 2 | ||
AF123882 (2477 bp) | 12q21.3* (99.8 %) | 1–2477 | 7 | pol-env (5720–8199) |
AF331500 (1629 bp) | Xq22.3b* (99.7 %) | 1–1332 | 4 | env (7720–9348) |
5p12* (99.4 %) | 1308–1629 | 2 | ||
AF123881 (1511 bp) | 3q26.32* (99.9 %) | 1–1511 | 2 | gag-pro (2765–4269) |
AF009668 (2304 bp) | 1p34.2 (99.1 %) | 1–633 | 6 | pro-pol (4178–6480) |
2p12a (100 %) | 623–736 | 0 | ||
2p24.2 (100 %) | 717–871 | 0 | ||
6q27b (98.5 %) | 837–1424 | 11 | ||
6q15 (97.2 %) | 1415–1763 | 10 | ||
3p12.3 (99.4 %) | 1719–2304 | 4 | ||
AF009666 (324 bp) | 1p34.2 (99.5 %) | 1–324 | 3 | pro-pol (4178–4521) |
AF009667 (118 bp) | 17q22 (98.2 %) | 1–118 | 2 | pol (5031–5148) |
AF123880 (1003 bp) | 5p12 (99.6 %) | 1–203 | 1 | 5′ LTR (255–803) |
3p24.1 (100 %) | 198–593 | 1 | ||
3q26.32 (98 %) | 592–1003 | 11 | ||
AF072494 pol probe (678 bp) | 6q21b (99.6 %) | 1–678 | 5 | pol (4660–5338) |
AF072496 gag probe (536 bp) | 6q21b (99.6 %) | 1–536 | 2 | pre gag-gag(2706–3199) |
AF072497 pro probe (364 bp) | 1p34.2 (99.2 %) | 1–364 | 4 | pro-pol (4166–4522 and 5641–5549) |
AF072498 env probe (591 bp) | Xq22.3b (99.5 %) | 1–591 | 3 | env (8606–9196) |