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Table 5 Env puteins analysis

From: Contribution of type W human endogenous retroviruses to the human genome: characterization of HERV-W proviral insertions and processed pseudogenes

Sequence

ORF length (amino acids)

Stop

Shift

7q21.2*

538

0

0

1p32.3b*

559

3

2

6q21a

552

4

2

15q21.3

543

2

2

4q13.3*

542

0

2

5q11.2

542

0

4

5q21.3*

542

6

2

12q13.12*

542

2

1

14q21.2*

542

3

1

Xq22.3b

542

1

0

3q11.2*

541

1

3

4q31.1*

541

2

2

17q12b

540

2

2

Xp22.31

529

0

6

20q13.2

483

0

1

11p15.4

475

2

3

3p24.1*

466

2

0

9q31.3

462

3

1

3q23a

453

2

1

4q32.3

443

1

2

1q32.3a

361

0

3

5p12*

355

6

0

1p34.2

352

2

1

Xq27.1

352

4

1

4q21.22*

320

0

1

17q12a

296

0

2

9q22.31

267

1

0

  1. Proviruses are labeled with *, Syncytin-1 ORF is highlighted in bold. Underlined sequences retain an ORF without internal stop codons; italic sequences did not present frameshifts
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Retrovirology

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