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Table 2 A. Fold changes in neutralization sensitivity of the Env-pseudotyped viruses to INDO-SA 2007 plasma depleted with the monomeric (4-2.J41) gp120 and trimeric (BG505-SOSIP.664) gp140 proteins. B. Specificity of INDO-SA 2007 BCN plasma antibodies to known epitopes in variable loops. C. Presence of MPER directed neutralizing antibodies in INDO-SA 2007 plasma

From: HIV-1 clade C escapes broadly neutralizing autologous antibodies with N332 glycan specificity by distinct mechanisms

A

Fold decrease in ID50 a

Monomer (4-2.J41 gp120)

Trimer (BG505-SOSIP.664)

25711-2.4

>10.00

>20.00

4-2.J41

3.00

5.37

7.J20

7.06

>14.00

Du172.17

>7.00

7.14

CAP84.32

>7.00

>11.00

CAP239.G3

6.00

5.91

B

HIV-1 Env mutants

Region

Neutralization titer (ID50)

Fold decrease in ID50 b

HIV-1 25711-2.4

Wild type

1822.04

–

HIV-1 CAP239.G3

Wild type

1096.00

–

HIV-1 25711-2.4 N160A

V2

1484.35

1.22

HIV-1 CAP239.G3 N160A

V2

4184.00

0.26

HIV-1 25711-2.4 R166A

V2

1833.00

0.99

HIV-1 25711-2.4 K169E

V2

2587.29

0.70

HIV-1 25711-2.4 N301A

V3 stem

749.81

2.42

HIV-1 25711-2.4 N332A

V3 stem

357.36

5.09

HIV-1 CAP239.G3 N332A

V3 stem

204.60

5.35

C

HIV-2/HIV-1 chimera

Region of HIV-1c

ID50

HIV-2 7312A

HIV-2 wild type

<20

HIV-2 7312A-C1C

Clade C MPER (ELLALDKWASLWNWFDITKWLWYIK)

63.77

HIV-2 7312A-C4

4E10 epitope (NWFDITKWLWYIK)

<20

HIV-2 7312A-C6

4E10 minimal (NWFDIT)

<20

  1. aFold reduction in neutralization of Env-pseudotyped viruses was obtained by comparing the neutralization titer (ID50 values) of panel viruses against undepleted and depleted INDO-SA 2007 plasma. ID50 values are reciprocal dilutions at which the undepleted and depleted plasma conferred 50 % neutralization of the Env-pseudotyped viruses in TZM-bl cells
  2. bID50 values refer to the reciprocal dilution that conferred 50 % neutralization of viruses in a TZM-bl assay. Assays were done in duplicates and were repeated more than three times. WT refers to wild type; MPER refers to membrane proximal external region in gp41
  3. cHIV-1 MPER residues that are grafted in the HIV-2 are given in the parenthesis