Table 2 Founder and escape lineages of a given epitope from each subject’s single time point sequence data
From: Molecular clock of HIV-1 envelope genes under early immune selection
Patient | Number of envelope sequences | Escape details |
|---|---|---|
CH077 |  | gp160 (352–361) |
 Founder-lineage | 9 | QFRNKTIVF |
 Escape-mutant 1 | 38 | QFKNKTIVF |
 Escape-mutant 2 | 4 | QFRNKAIVF |
CH164 |  | gp160 (2–10) |
 Founder-lineage | 5 | RVMETRRSW |
 Escape-mutant 1 | 10 | RVMKTRRSW |
 Escape-mutant 2 | 8 | RVMGTRRSW |
SUMA0874 |  | gp160 (744–753) |
 Founder-lineage | 18 | RSSRLVDGFL |
 Escape-mutant 1 | 6 | RSGRLVDGFL |
 Escape-mutant 2 | 4 | RSSCLVDGFL |
WEAU0575 |  | gp160 (31–39) |
 Founder-lineage | 24 | AENLWVTVY |
 Escape-mutant 1 | 18 | AEKLWVTVY |
 Escape-mutant 2 | 7 | TENLWVTVY |
 Escape-mutant 3 | 5 | VENLWVTVY |
 Escape-mutant 4 | 4 | AKNLWVTVY |