TY - JOUR AU - Bell, N. M. AU - Lever, A. M. PY - 2013 DA - 2013// TI - HIV Gag polyprotein: processing and early viral particle assembly JO - Trends Microbiol VL - 21 UR - https://doi.org/10.1016/j.tim.2012.11.006 DO - 10.1016/j.tim.2012.11.006 ID - Bell2013 ER - TY - JOUR AU - Rein, A. PY - 2010 DA - 2010// TI - Nucleic acid chaperone activity of retroviral Gag proteins JO - RNA Biol VL - 7 UR - https://doi.org/10.4161/rna.7.6.13685 DO - 10.4161/rna.7.6.13685 ID - Rein2010 ER - TY - JOUR AU - Rein, A. AU - Datta, S. A. AU - Jones, C. P. AU - Musier-Forsyth, K. PY - 2011 DA - 2011// TI - Diverse interactions of retroviral Gag proteins with RNAs JO - Trends Biochem Sci VL - 36 ID - Rein2011 ER - TY - JOUR AU - Ganser-Pornillos, B. K. AU - Yeager, M. AU - Sundquist, W. I. PY - 2008 DA - 2008// TI - The structural biology of HIV assembly JO - Curr Opin Struct Biol VL - 18 UR - https://doi.org/10.1016/j.sbi.2008.02.001 DO - 10.1016/j.sbi.2008.02.001 ID - Ganser-Pornillos2008 ER - TY - JOUR AU - Saad, J. S. AU - Miller, J. AU - Tai, J. AU - Kim, A. AU - Ghanam, R. H. AU - Summers, M. F. PY - 2006 DA - 2006// TI - Structural basis for targeting HIV-1 Gag proteins to the plasma membrane for virus assembly JO - Proc Natl Acad Sci USA VL - 103 UR - https://doi.org/10.1073/pnas.0602818103 DO - 10.1073/pnas.0602818103 ID - Saad2006 ER - TY - JOUR AU - Chukkapalli, V. AU - Ono, A. PY - 2011 DA - 2011// TI - Molecular determinants that regulate plasma membrane association of HIV-1 Gag JO - J Mol Biol VL - 410 UR - https://doi.org/10.1016/j.jmb.2011.04.015 DO - 10.1016/j.jmb.2011.04.015 ID - Chukkapalli2011 ER - TY - JOUR AU - Mayo, K. AU - Huseby, D. AU - McDermott, J. AU - Arvidson, B. AU - Finlay, L. AU - Barklis, E. PY - 2003 DA - 2003// TI - Retrovirus capsid protein assembly arrangements JO - J Mol Biol VL - 325 UR - https://doi.org/10.1016/S0022-2836(02)01176-2 DO - 10.1016/S0022-2836(02)01176-2 ID - Mayo2003 ER - TY - JOUR AU - Muriaux, D. AU - Darlix, J. L. PY - 2010 DA - 2010// TI - Properties and functions of the nucleocapsid protein in virus assembly JO - RNA Biol VL - 7 UR - https://doi.org/10.4161/rna.7.6.14065 DO - 10.4161/rna.7.6.14065 ID - Muriaux2010 ER - TY - JOUR AU - Campbell, S. AU - Rein, A. PY - 1999 DA - 1999// TI - In vitro assembly properties of human immunodeficiency virus type 1 Gag protein lacking the p6 domain JO - J Virol VL - 73 ID - Campbell1999 ER - TY - CHAP AU - Swanstrom, R. AU - Wills, J. W. ED - Coffin, J. M. ED - Hughes, S. H. ED - Varmus, H. E. PY - 1997 DA - 1997// TI - Synthesis, assembly, and processing of viral proteins BT - Retroviruses PB - Cold Spring Harbor Laboratory Press CY - Cold Spring Harbor, NY ID - Swanstrom1997 ER - TY - JOUR AU - Levin, J. G. AU - Guo, J. AU - Rouzina, I. AU - Musier-Forsyth, K. PY - 2005 DA - 2005// TI - Nucleic acid chaperone activity of HIV-1 nucleocapsid protein: critical role in reverse transcription and molecular mechanism JO - Prog Nucleic Acid Res Mol Biol VL - 80 UR - https://doi.org/10.1016/S0079-6603(05)80006-6 DO - 10.1016/S0079-6603(05)80006-6 ID - Levin2005 ER - TY - JOUR AU - Mannioui, A. AU - Nelson, E. AU - Schiffer, C. AU - Felix, N. AU - Rouzic, E. AU - Benichou, S. PY - 2005 DA - 2005// TI - Human immunodeficiency virus type 1 KK26-27 matrix mutants display impaired infectivity, circularization and integration but not nuclear import JO - Virology VL - 339 UR - https://doi.org/10.1016/j.virol.2005.05.023 DO - 10.1016/j.virol.2005.05.023 ID - Mannioui2005 ER - TY - JOUR AU - Bukrinskaya, A. PY - 2007 DA - 2007// TI - HIV-1 matrix protein: a mysterious regulator of the viral life cycle JO - Virus Res VL - 124 UR - https://doi.org/10.1016/j.virusres.2006.07.001 DO - 10.1016/j.virusres.2006.07.001 ID - Bukrinskaya2007 ER - TY - JOUR AU - Guo, F. AU - Saadatmand, J. AU - Niu, M. AU - Kleiman, L. PY - 2009 DA - 2009// TI - Roles of Gag and NCp7 in facilitating tRNA(Lys)(3) Annealing to viral RNA in human immunodeficiency virus type 1 JO - J Virol VL - 83 UR - https://doi.org/10.1128/JVI.00488-09 DO - 10.1128/JVI.00488-09 ID - Guo2009 ER - TY - JOUR AU - Rye-McCurdy, T. D. AU - Nadaraia-Hoke, S. AU - Gudleski-O’Regan, N. AU - Flanagan, J. M. AU - Parent, L. J. AU - Musier-Forsyth, K. PY - 2014 DA - 2014// TI - Mechanistic differences between nucleic acid chaperone activities of the Gag proteins of Rous sarcoma virus and human immunodeficiency virus type 1 are attributed to the MA domain JO - J Virol VL - 88 UR - https://doi.org/10.1128/JVI.00736-14 DO - 10.1128/JVI.00736-14 ID - Rye-McCurdy2014 ER - TY - JOUR AU - Wu, T. AU - Datta, S. A. AU - Mitra, M. AU - Gorelick, R. J. AU - Rein, A. AU - Levin, J. G. PY - 2010 DA - 2010// TI - Fundamental differences between the nucleic acid chaperone activities of HIV-1 nucleocapsid protein and Gag or Gag-derived proteins: biological implications JO - Virology VL - 405 UR - https://doi.org/10.1016/j.virol.2010.06.042 DO - 10.1016/j.virol.2010.06.042 ID - Wu2010 ER - TY - JOUR AU - Jones, C. P. AU - Datta, S. A. AU - Rein, A. AU - Rouzina, I. AU - Musier-Forsyth, K. PY - 2011 DA - 2011// TI - Matrix domain modulates HIV-1 Gag’s nucleic acid chaperone activity via inositol phosphate binding JO - J Virol VL - 85 UR - https://doi.org/10.1128/JVI.01809-10 DO - 10.1128/JVI.01809-10 ID - Jones2011 ER - TY - JOUR AU - Feng, Y. X. AU - Campbell, S. AU - Harvin, D. AU - Ehresmann, B. AU - Ehresmann, C. AU - Rein, A. PY - 1999 DA - 1999// TI - The human immunodeficiency virus type 1 Gag polyprotein has nucleic acid chaperone activity: possible role in dimerization of genomic RNA and placement of tRNA on the primer binding site JO - J Virol VL - 73 ID - Feng1999 ER - TY - JOUR AU - Rajkowitsch, L. AU - Chen, D. AU - Stampfl, S. AU - Semrad, K. AU - Waldsich, C. AU - Mayer, O. PY - 2007 DA - 2007// TI - RNA chaperones, RNA annealers and RNA helicases JO - RNA Biol VL - 4 UR - https://doi.org/10.4161/rna.4.3.5445 DO - 10.4161/rna.4.3.5445 ID - Rajkowitsch2007 ER - TY - JOUR AU - Alfadhli, A. AU - McNett, H. AU - Tsagli, S. AU - Bachinger, H. P. AU - Peyton, D. H. AU - Barklis, E. PY - 2011 DA - 2011// TI - HIV-1 matrix protein binding to RNA JO - J Mol Biol VL - 410 UR - https://doi.org/10.1016/j.jmb.2011.04.063 DO - 10.1016/j.jmb.2011.04.063 ID - Alfadhli2011 ER - TY - JOUR AU - Alfadhli, A. AU - Still, A. AU - Barklis, E. PY - 2009 DA - 2009// TI - Analysis of human immunodeficiency virus type 1 matrix binding to membranes and nucleic acids JO - J Virol VL - 83 UR - https://doi.org/10.1128/JVI.01197-09 DO - 10.1128/JVI.01197-09 ID - Alfadhli2009 ER - TY - JOUR AU - Katoh, I. AU - Kyushiki, H. AU - Sakamoto, Y. AU - Ikawa, Y. AU - Yoshinaka, Y. PY - 1991 DA - 1991// TI - Bovine leukemia virus matrix-associated protein MA(p15): further processing and formation of a specific complex with the dimer of the 5′-terminal genomic RNA fragment JO - J Virol VL - 65 ID - Katoh1991 ER - TY - JOUR AU - Ott, D. E. AU - Coren, L. V. AU - Gagliardi, T. D. PY - 2005 DA - 2005// TI - Redundant roles for nucleocapsid and matrix RNA-binding sequences in human immunodeficiency virus type 1 assembly JO - J Virol VL - 79 UR - https://doi.org/10.1128/JVI.79.22.13839-13847.2005 DO - 10.1128/JVI.79.22.13839-13847.2005 ID - Ott2005 ER - TY - JOUR AU - Purohit, P. AU - Dupont, S. AU - Stevenson, M. AU - Green, M. R. PY - 2001 DA - 2001// TI - Sequence-specific interaction between HIV-1 matrix protein and viral genomic RNA revealed by in vitro genetic selection JO - RNA VL - 7 UR - https://doi.org/10.1017/S1355838201002023 DO - 10.1017/S1355838201002023 ID - Purohit2001 ER - TY - JOUR AU - Sun, M. AU - Grigsby, I. F. AU - Gorelick, R. J. AU - Mansky, L. M. AU - Musier-Forsyth, K. PY - 2014 DA - 2014// TI - Retrovirus-specific differences in matrix and nucleocapsid protein-nucleic acid interactions: implications for genomic RNA packaging JO - J Virol VL - 88 UR - https://doi.org/10.1128/JVI.02151-13 DO - 10.1128/JVI.02151-13 ID - Sun2014 ER - TY - JOUR AU - Wang, H. AU - Norris, K. M. AU - Mansky, L. M. PY - 2003 DA - 2003// TI - Involvement of the matrix and nucleocapsid domains of the bovine leukemia virus Gag polyprotein precursor in viral RNA packaging JO - J Virol VL - 77 UR - https://doi.org/10.1128/JVI.77.17.9431-9438.2003 DO - 10.1128/JVI.77.17.9431-9438.2003 ID - Wang2003 ER - TY - JOUR AU - Deshmukh, L. AU - Ghirlando, R. AU - Clore, G. M. PY - 2015 DA - 2015// TI - Conformation and dynamics of the Gag polyprotein of the human immunodeficiency virus 1 studied by NMR spectroscopy JO - Proc Natl Acad Sci USA VL - 112 UR - https://doi.org/10.1073/pnas.1501985112 DO - 10.1073/pnas.1501985112 ID - Deshmukh2015 ER - TY - JOUR AU - Stewart-Maynard, K. M. AU - Cruceanu, M. AU - Wang, F. AU - Vo, M. N. AU - Gorelick, R. J. AU - Williams, M. C. PY - 2008 DA - 2008// TI - Retroviral nucleocapsid proteins display nonequivalent levels of nucleic acid chaperone activity JO - J Virol VL - 82 UR - https://doi.org/10.1128/JVI.01169-08 DO - 10.1128/JVI.01169-08 ID - Stewart-Maynard2008 ER - TY - JOUR AU - Pachulska-Wieczorek, K. AU - Stefaniak, A. K. AU - Purzycka, K. J. PY - 2014 DA - 2014// TI - Similarities and differences in the nucleic acid chaperone activity of HIV-2 and HIV-1 nucleocapsid proteins in vitro JO - Retrovirology VL - 11 UR - https://doi.org/10.1186/1742-4690-11-54 DO - 10.1186/1742-4690-11-54 ID - Pachulska-Wieczorek2014 ER - TY - JOUR AU - D’Souza, V. AU - Summers, M. F. PY - 2005 DA - 2005// TI - How retroviruses select their genomes JO - Nat Rev Microbiol VL - 3 UR - https://doi.org/10.1038/nrmicro1210 DO - 10.1038/nrmicro1210 ID - D’Souza2005 ER - TY - JOUR AU - Kutluay, S. B. AU - Zang, T. AU - Blanco-Melo, D. AU - Powell, C. AU - Jannain, D. AU - Errando, M. PY - 2014 DA - 2014// TI - Global changes in the RNA binding specificity of HIV-1 gag regulate virion genesis JO - Cell VL - 159 UR - https://doi.org/10.1016/j.cell.2014.09.057 DO - 10.1016/j.cell.2014.09.057 ID - Kutluay2014 ER - TY - JOUR AU - Matsui, T. AU - Tanaka, T. AU - Endoh, H. AU - Sato, K. AU - Tanaka, H. AU - Miyauchi, E. PY - 2009 DA - 2009// TI - The RNA recognition mechanism of human immunodeficiency virus (HIV) type 2 NCp8 is different from that of HIV-1 NCp7 JO - Biochemistry VL - 48 UR - https://doi.org/10.1021/bi802364b DO - 10.1021/bi802364b ID - Matsui2009 ER - TY - JOUR AU - Purzycka, K. J. AU - Pachulska-Wieczorek, K. AU - Adamiak, R. W. PY - 2011 DA - 2011// TI - The in vitro loose dimer structure and rearrangements of the HIV-2 leader RNA JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkr385 DO - 10.1093/nar/gkr385 ID - Purzycka2011 ER - TY - JOUR AU - Ni, N. AU - Nikolaitchik, O. A. AU - Dilley, K. A. AU - Chen, J. AU - Galli, A. AU - Fu, W. PY - 2011 DA - 2011// TI - Mechanisms of human immunodeficiency virus type 2 RNA packaging: efficient trans packaging and selection of RNA copackaging partners JO - J Virol VL - 85 UR - https://doi.org/10.1128/JVI.00562-11 DO - 10.1128/JVI.00562-11 ID - Ni2011 ER - TY - JOUR AU - Dilley, K. A. AU - Ni, N. AU - Nikolaitchik, O. A. AU - Chen, J. AU - Galli, A. AU - Hu, W. S. PY - 2011 DA - 2011// TI - Determining the frequency and mechanisms of HIV-1 and HIV-2 RNA copackaging by single-virion analysis JO - J Virol VL - 85 UR - https://doi.org/10.1128/JVI.05147-11 DO - 10.1128/JVI.05147-11 ID - Dilley2011 ER - TY - JOUR AU - Kaye, J. F. AU - Lever, A. M. PY - 1998 DA - 1998// TI - Nonreciprocal packaging of human immunodeficiency virus type 1 and type 2 RNA: a possible role for the p2 domain of Gag in RNA encapsidation JO - J Virol VL - 72 ID - Kaye1998 ER - TY - JOUR AU - Kaye, J. F. AU - Lever, A. M. PY - 1999 DA - 1999// TI - Human immunodeficiency virus types 1 and 2 differ in the predominant mechanism used for selection of genomic RNA for encapsidation JO - J Virol VL - 73 ID - Kaye1999 ER - TY - JOUR AU - Griffin, S. D. AU - Allen, J. F. AU - Lever, A. M. PY - 2001 DA - 2001// TI - The major human immunodeficiency virus type 2 (HIV-2) packaging signal is present on all HIV-2 RNA species: cotranslational RNA encapsidation and limitation of Gag protein confer specificity JO - J Virol VL - 75 UR - https://doi.org/10.1128/JVI.75.24.12058-12069.2001 DO - 10.1128/JVI.75.24.12058-12069.2001 ID - Griffin2001 ER - TY - JOUR AU - Berkowitz, R. D. AU - Ohagen, A. AU - Hoglund, S. AU - Goff, S. P. PY - 1995 DA - 1995// TI - Retroviral nucleocapsid domains mediate the specific recognition of genomic viral RNAs by chimeric Gag polyproteins during RNA packaging in vivo JO - J Virol VL - 69 ID - Berkowitz1995 ER - TY - JOUR AU - Ott, D. E. AU - Coren, L. V. AU - Chertova, E. N. AU - Gagliardi, T. D. AU - Nagashima, K. AU - Sowder, R. C. PY - 2003 DA - 2003// TI - Elimination of protease activity restores efficient virion production to a human immunodeficiency virus type 1 nucleocapsid deletion mutant JO - J Virol VL - 77 UR - https://doi.org/10.1128/JVI.77.10.5547-5556.2003 DO - 10.1128/JVI.77.10.5547-5556.2003 ID - Ott2003 ER - TY - JOUR AU - Parent, L. J. AU - Gudleski, N. PY - 2011 DA - 2011// TI - Beyond plasma membrane targeting: role of the MA domain of Gag in retroviral genome encapsidation JO - J Mol Biol VL - 410 UR - https://doi.org/10.1016/j.jmb.2011.04.072 DO - 10.1016/j.jmb.2011.04.072 ID - Parent2011 ER - TY - JOUR AU - L’Hernault, A. AU - Weiss, E. U. AU - Greatorex, J. S. AU - Lever, A. M. PY - 2012 DA - 2012// TI - HIV-2 genome dimerization is required for the correct processing of Gag: a second-site reversion in matrix can restore both processes in dimerization-impaired mutant viruses JO - J Virol VL - 86 UR - https://doi.org/10.1128/JVI.00124-12 DO - 10.1128/JVI.00124-12 ID - L’Hernault2012 ER - TY - JOUR AU - Saad, J. S. AU - Ablan, S. D. AU - Ghanam, R. H. AU - Kim, A. AU - Andrews, K. AU - Nagashima, K. PY - 2008 DA - 2008// TI - Structure of the myristylated human immunodeficiency virus type 2 matrix protein and the role of phosphatidylinositol-(4,5)-bisphosphate in membrane targeting JO - J Mol Biol VL - 382 UR - https://doi.org/10.1016/j.jmb.2008.07.027 DO - 10.1016/j.jmb.2008.07.027 ID - Saad2008 ER - TY - JOUR AU - Hill, C. P. AU - Worthylake, D. AU - Bancroft, D. P. AU - Christensen, A. M. AU - Sundquist, W. I. PY - 1996 DA - 1996// TI - Crystal structures of the trimeric human immunodeficiency virus type 1 matrix protein: implications for membrane association and assembly JO - Proc Natl Acad Sci USA VL - 93 UR - https://doi.org/10.1073/pnas.93.7.3099 DO - 10.1073/pnas.93.7.3099 ID - Hill1996 ER - TY - JOUR AU - Guzman, R. N. AU - Wu, Z. R. AU - Stalling, C. C. AU - Pappalardo, L. AU - Borer, P. N. AU - Summers, M. F. PY - 1998 DA - 1998// TI - Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element JO - Science VL - 279 UR - https://doi.org/10.1126/science.279.5349.384 DO - 10.1126/science.279.5349.384 ID - Guzman1998 ER - TY - JOUR AU - Massiah, M. A. AU - Starich, M. R. AU - Paschall, C. AU - Summers, M. F. AU - Christensen, A. M. AU - Sundquist, W. I. PY - 1994 DA - 1994// TI - Three-dimensional structure of the human immunodeficiency virus type 1 matrix protein JO - J Mol Biol VL - 244 UR - https://doi.org/10.1006/jmbi.1994.1719 DO - 10.1006/jmbi.1994.1719 ID - Massiah1994 ER - TY - JOUR AU - Mirambeau, G. AU - Lyonnais, S. AU - Gorelick, R. J. PY - 2010 DA - 2010// TI - Features, processing states, and heterologous protein interactions in the modulation of the retroviral nucleocapsid protein function JO - RNA Biol VL - 7 UR - https://doi.org/10.4161/rna.7.6.13777 DO - 10.4161/rna.7.6.13777 ID - Mirambeau2010 ER - TY - JOUR AU - Chukkapalli, V. AU - Oh, S. J. AU - Ono, A. PY - 2010 DA - 2010// TI - Opposing mechanisms involving RNA and lipids regulate HIV-1 Gag membrane binding through the highly basic region of the matrix domain JO - Proc Natl Acad Sci USA VL - 107 UR - https://doi.org/10.1073/pnas.0908661107 DO - 10.1073/pnas.0908661107 ID - Chukkapalli2010 ER - TY - JOUR AU - Datta, S. A. AU - Zhao, Z. AU - Clark, P. K. AU - Tarasov, S. AU - Alexandratos, J. N. AU - Campbell, S. J. PY - 2007 DA - 2007// TI - Interactions between HIV-1 Gag molecules in solution: an inositol phosphate-mediated switch JO - J Mol Biol VL - 365 UR - https://doi.org/10.1016/j.jmb.2006.10.072 DO - 10.1016/j.jmb.2006.10.072 ID - Datta2007 ER - TY - JOUR AU - Inlora, J. AU - Collins, D. R. AU - Trubin, M. E. AU - Chung, J. Y. AU - Ono, A. PY - 2014 DA - 2014// TI - Membrane binding and subcellular localization of retroviral Gag proteins are differentially regulated by MA interactions with phosphatidylinositol-(4,5)-bisphosphate and RNA JO - MBio VL - 5 UR - https://doi.org/10.1128/mBio.02202-14 DO - 10.1128/mBio.02202-14 ID - Inlora2014 ER - TY - JOUR AU - Chukkapalli, V. AU - Inlora, J. AU - Todd, G. C. AU - Ono, A. PY - 2013 DA - 2013// TI - Evidence in support of RNA-mediated inhibition of phosphatidylserine-dependent HIV-1 Gag membrane binding in cells JO - J Virol VL - 87 UR - https://doi.org/10.1128/JVI.00075-13 DO - 10.1128/JVI.00075-13 ID - Chukkapalli2013 ER - TY - JOUR AU - Pachulska-Wieczorek, K. AU - Purzycka, K. J. AU - Adamiak, R. W. PY - 2006 DA - 2006// TI - New, extended hairpin form of the TAR-2 RNA domain points to the structural polymorphism at the 5′ end of the HIV-2 leader RNA JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl373 DO - 10.1093/nar/gkl373 ID - Pachulska-Wieczorek2006 ER - TY - JOUR AU - Dirac, A. M. AU - Huthoff, H. AU - Kjems, J. AU - Berkhout, B. PY - 2002 DA - 2002// TI - Regulated HIV-2 RNA dimerization by means of alternative RNA conformations JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/gkf381 DO - 10.1093/nar/gkf381 ID - Dirac2002 ER - TY - JOUR AU - Rajkowitsch, L. AU - Semrad, K. AU - Mayer, O. AU - Schroeder, R. PY - 2005 DA - 2005// TI - Assays for the RNA chaperone activity of proteins JO - Biochem Soc Trans VL - 33 UR - https://doi.org/10.1042/BST0330450 DO - 10.1042/BST0330450 ID - Rajkowitsch2005 ER - TY - JOUR AU - Stoylov, S. P. AU - Vuilleumier, C. AU - Stoylova, E. AU - Rocquigny, H. AU - Roques, B. P. AU - Gerard, D. PY - 1997 DA - 1997// TI - Ordered aggregation of ribonucleic acids by the human immunodeficiency virus type 1 nucleocapsid protein JO - Biopolymers VL - 41 UR - https://doi.org/3.0.CO;2-W DO - 3.0.CO;2-W ID - Stoylov1997 ER - TY - JOUR AU - Lanchy, J. M. AU - Ivanovitch, J. D. AU - Lodmell, J. S. PY - 2003 DA - 2003// TI - A structural linkage between the dimerization and encapsidation signals in HIV-2 leader RNA JO - RNA VL - 9 UR - https://doi.org/10.1261/rna.5590603 DO - 10.1261/rna.5590603 ID - Lanchy2003 ER - TY - JOUR AU - Dirac, A. M. AU - Huthoff, H. AU - Kjems, J. AU - Berkhout, B. PY - 2001 DA - 2001// TI - The dimer initiation site hairpin mediates dimerization of the human immunodeficiency virus, type 2 RNA genome JO - J Biol Chem VL - 276 UR - https://doi.org/10.1074/jbc.M103462200 DO - 10.1074/jbc.M103462200 ID - Dirac2001 ER - TY - JOUR AU - Bjellqvist, B. AU - Basse, B. AU - Olsen, E. AU - Celis, J. E. PY - 1994 DA - 1994// TI - Reference points for comparisons of 2-dimensional maps of proteins from different human cell-types defined in a pH scale where isoelectric points correlate with polypeptide compositions JO - Electrophoresis VL - 15 UR - https://doi.org/10.1002/elps.1150150171 DO - 10.1002/elps.1150150171 ID - Bjellqvist1994 ER - TY - JOUR AU - Nishida, Y. AU - Pachulska-Wieczorek, K. AU - Blaszczyk, L. AU - Saha, A. AU - Gumna, J. AU - Garfinkel, D. J. PY - 2015 DA - 2015// TI - Ty1 retrovirus-like element Gag contains overlapping restriction factor and nucleic acid chaperone functions JO - Nucleic Acids Res ID - Nishida2015 ER - TY - JOUR AU - Webb, J. A. AU - Jones, C. P. AU - Parent, L. J. AU - Rouzina, I. AU - Musier-Forsyth, K. PY - 2013 DA - 2013// TI - Distinct binding interactions of HIV-1 Gag to Psi and non-Psi RNAs: implications for viral genomic RNA packaging JO - RNA VL - 19 UR - https://doi.org/10.1261/rna.038869.113 DO - 10.1261/rna.038869.113 ID - Webb2013 ER - TY - JOUR AU - Andersen, E. S. AU - Contera, S. A. AU - Knudsen, B. AU - Damgaard, C. K. AU - Besenbacher, F. AU - Kjems, J. PY - 2004 DA - 2004// TI - Role of the trans-activation response element in dimerization of HIV-1 RNA JO - J Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M314326200 DO - 10.1074/jbc.M314326200 ID - Andersen2004 ER - TY - JOUR AU - Song, R. AU - Kafaie, J. AU - Laughrea, M. PY - 2008 DA - 2008// TI - Role of the 5′ TAR stem–loop and the U5-AUG duplex in dimerization of HIV-1 genomic RNA JO - Biochemistry VL - 47 UR - https://doi.org/10.1021/bi7023173 DO - 10.1021/bi7023173 ID - Song2008 ER - TY - JOUR AU - Heilman-Miller, S. L. AU - Wu, T. AU - Levin, J. G. PY - 2004 DA - 2004// TI - Alteration of nucleic acid structure and stability modulates the efficiency of minus-strand transfer mediated by the HIV-1 nucleocapsid protein JO - J Biol Chem VL - 279 UR - https://doi.org/10.1074/jbc.M401646200 DO - 10.1074/jbc.M401646200 ID - Heilman-Miller2004 ER - TY - JOUR AU - Soto-Rifo, R. AU - Limousin, T. AU - Rubilar, P. S. AU - Ricci, E. P. AU - Decimo, D. AU - Moncorge, O. PY - 2012 DA - 2012// TI - Different effects of the TAR structure on HIV-1 and HIV-2 genomic RNA translation JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr1093 DO - 10.1093/nar/gkr1093 ID - Soto-Rifo2012 ER - TY - JOUR AU - Purzycka, K. J. AU - Legiewicz, M. AU - Matsuda, E. AU - Eizentstat, L. D. AU - Lusvarghi, S. AU - Saha, A. PY - 2013 DA - 2013// TI - Exploring Ty1 retrotransposon RNA structure within virus-like particles JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gks983 DO - 10.1093/nar/gks983 ID - Purzycka2013 ER - TY - JOUR AU - Vasa, S. M. AU - Guex, N. AU - Wilkinson, K. A. AU - Weeks, K. M. AU - Giddings, M. C. PY - 2008 DA - 2008// TI - ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis JO - RNA VL - 14 UR - https://doi.org/10.1261/rna.1166808 DO - 10.1261/rna.1166808 ID - Vasa2008 ER - TY - JOUR AU - Low, J. T. AU - Weeks, K. M. PY - 2010 DA - 2010// TI - SHAPE-directed RNA secondary structure prediction JO - Methods VL - 52 UR - https://doi.org/10.1016/j.ymeth.2010.06.007 DO - 10.1016/j.ymeth.2010.06.007 ID - Low2010 ER - TY - JOUR AU - Crooks, G. E. AU - Hon, G. AU - Chandonia, J. M. AU - Brenner, S. E. PY - 2004 DA - 2004// TI - WebLogo: a sequence logo generator JO - Genome Res VL - 14 UR - https://doi.org/10.1101/gr.849004 DO - 10.1101/gr.849004 ID - Crooks2004 ER -