Retrovirology

Table 2 Comparison of myristoylated MMTV MA with other retroviral MAs

From: Myristoylation drives dimerization of matrix protein from mouse mammary tumor virus

Genus	Species	PDB ID	Method	RMSD^a	N^b	%id^c	%sim^c
alpha	RSV	1A6S	NMR	4.68	72	13	19
beta	M-PMV	2F76	NMR	3.49	80	27	51
gamma	MoMuLV	1MN8	X-ray	4.67	80	15	31
delta	HTLV -2	1JVR	NMR	4.57	72	12	20
lenti	HIV-1	1HIW	X-ray	4.46	72	9	15

^aRoot mean square deviation of Cα-atoms
^bNumber of aligned residues for structural alignment
^cSequence identity and similarity, respectively, determined by global alignment using the Needle-Wunsch algorithm on the EMBL-EBI website with default parameters (http://www.ebi.ac.uk/Tools/psa/)

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ISSN: 1742-4690

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