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Table 2 Comparison of myristoylated MMTV MA with other retroviral MAs

From: Myristoylation drives dimerization of matrix protein from mouse mammary tumor virus

Genus Species PDB ID Method RMSDa Nb %idc %simc
alpha RSV 1A6S NMR 4.68 72 13 19
beta M-PMV 2F76 NMR 3.49 80 27 51
gamma MoMuLV 1MN8 X-ray 4.67 80 15 31
delta HTLV -2 1JVR NMR 4.57 72 12 20
lenti HIV-1 1HIW X-ray 4.46 72 9 15
  1. aRoot mean square deviation of Cα-atoms
  2. bNumber of aligned residues for structural alignment
  3. cSequence identity and similarity, respectively, determined by global alignment using the Needle-Wunsch algorithm on the EMBL-EBI website with default parameters (http://www.ebi.ac.uk/Tools/psa/)