Table 6 Chains with the most intact env
From: Classification and characterization of human endogenous retroviruses; mosaic forms are common
Rvnr | Chr | Chainstart | Subgenes | Noncanon | Canon | Gag | Pro | Pol | Env | Envgroup2 |
|---|---|---|---|---|---|---|---|---|---|---|
2862 | 8 | 74818435 | 5PMCNPrRITPp3 | HERV9 | 5/4 | 0/0 | 6/9 | 0/0 | HERV9_a | |
5600 | X | 97096726 | 5PMCNPrRIT3 | HERVFC | 1/0 | 0/0 | 1/1 | 0/0 | HERVFC_a | |
738 | 2 | 166572669 | 5PMCNPrRISTPp3 | HERVH | 1/4 | 0/0 | 3/0 | 0/0 | HERVH_a | |
4229 | 14 | 106663735 | 5PCNPrRIST3 | HERVT | 2/2 | 1/0 | 4/2 | 0/0 | HERVT_a | |
2556 | 7 | 92107320 | 5PNPrRITPp3 | HERVW | 0/0 | 1/0 | 4/7 | 0/0 | HERVW_a | |
2214 | 6 | 78436056 | 5PMCNDPrRISTPp3 | HML2 | 0/0 | 0/0 | 0/3 | 0/0 | HML2_a | |
2409 | 7 | 4639990 | 5PMCNDPrRISTPp3 | HML2 | 1/0 | 0/1 | 0/0 | 0/0 | HML2_a | |
2704 | 8 | 7364785 | 5PMCNDPrRISTPp3 | HML2 | 0/0 | 0/1 | 0/0 | 0/0 | HML2_a | |
3808 | 12 | 58730671 | 5PMCNDPrRISTPp3 | HML2 | 0/0 | 0/0 | 0/3 | 0/0 | HML2_a | |
6069 | 1 | 155605494 | 5PMCNDPrRISTPp3 | HML2 | 1/0 | 0/0 | 0/0 | 0/0 | HML2_a | |
6264 | 22 | 18926329 | 5PMCNDPrRISTPp3 | HML2 | 0/0 | 1/0 | 1/1 | 0/0 | HML2_a | |
2410 | 7 | 4631501 | 5PCNDPrRISTPp3 | HML2 | 1/0 | 0/0 | 0/0 | 0/0 | HML2_a | |
4695 | 19 | 28137359 | PMCNDPrRISTPp3 | HML2 | 0/0 | 0/1 | 0/1 | 0/0 | HML2_a | |
5931 | 1 | 75842927 | 5PMCNDISTPp3 | HML2 | 0/0 | 0/0 | 0/0 | 0/0 | HML2_a | |
679 | 2 | 130727258 | NRISTPp3 | HML2 | 0/0 | 0/0 | 14/20 | 0/0 | HML2_a | |
4648 | 19 | 20938119 | 5PCNPrRISTPp3 | HERVE | 3/1 | 0/0 | 4/2 | 1/0 | HERVE_a | |
721 | 2 | 155723861 | 5PMCNPrRISTPp3 | HERVH | 5/3 | 1/1 | 6/3 | 1/0 | HERVH_a | |
1220 | 3 | 166547460 | 5PMCNPrRSTPp3 | HERVH | 3/5 | 0/0 | 9/7 | 1/0 | HERVH_a | |
2213 | 6 | 78376119 | 5PMCNPrRIST3 | HERVH | 1/8 | 0/0 | 3/2 | 0/1 | HERVH_a | |
4639 | 19 | 20472849 | 5PCNPrRIT3 | HERVT | 3/3 | 3/1 | 11/2 | 0/1 | HERVT_a | |
1067 | 3 | 112752255 | 5PMCNDPrRISTPp3 | HML2 | 0/0 | 1/1 | 0/1 | 0/1 | HML2_a | |
1260 | 3 | 185289375 | 5PMCNDPrRISTPp3 | HML2 | 0/1 | 0/1 | 0/0 | 1/0 | HML2_a | |
1793 | 5 | 30496057 | 5PMCNDPrRISTPp3 | HML2 | 2/0 | 0/0 | 2/1 | 1/0 | HML2_a | |
3625 | 11 | 101565821 | 5PMCNDPrRISTPp3 | HML2 | 1/0 | 0/0 | 0/0 | 1/0 | HML2_a | |
6079 | 1 | 160660602 | 5PMCNDPrRISTPp3 | HML2 | 3/2 | 0/0 | 3/2 | 0/1 | HML2_a | |
2025 | 5 | 156093754 | 5PMCNDPrRISTPp3 | HML2 | 0/0 | 0/0 | 0/0 | 1/0 | HML2_a | |
3340 | 10 | 101587714 | PMCNDPrRISTPPT | HML2 | 0/2 | 0/1 | 1/1 | 0/1 | HML2_a | |
2976 | 8 | 140482803 | MCNPrRITPp3 | HML2 | 0/0 | 0/0 | 0/0 | 0/1 | HML2_a | |
5759 | X | 148763072 | CNDPrRITPPT | HML5 | 0/0 | 2/1 | 8/2 | 0/1 | HML5_a | |
691 | 2 | 136836895 | CPrITPp3 | HML6 | 0/0 | 0/0 | 8/3 | 0/1 | HML6_c | |
2048 | 5 | 171824497 | NPrRSTPPT | HML8 | 0/0 | 0/0 | 1/ 2 | 0/1 | HML8_a | |
3898 | 12 | 105703025 | RISTPPT | HML8 | 0/0 | 0/0 | 4/7 | 0/1 | HML8_a | |
2521 | 7 | 64460314 | 5PMCNPrRIST3 | HERV3 | 3/4 | 1/0 | 12/5 | 2/0 | HERV3_b |