MTCT pair | Nseq
| Nhyper
| Pr(PHIall) | Pr(PHIend) | Nrecomb
| Diversity | Recomb (%) |
|---|
M1001/P1024 | 18/38 | 0/3 | 2.23e−24 | 0.269 | 12/23 | 15/25 | 67/60 |
M1002/P1031 | 25/56 | 0/0 | 1.21e−16 | 0.053 | 15/26 | 13/23 | 60/46 |
M1003/P1189 | 11/31 | 0/0 | 1.93e−10 | 0.321 | 1/12 | 5/26 | 9/39 |
M1007/P1046 | 22/67 | 0/0 | 1.17e−3 | 0.079 | 2/17 | 5/14 | 9/25 |
-
N
seq
number of sequences investigated, N
hyper
number of hypermutants detected, Pr(PHI
all
) probability of PHI-test with all non-hypermutant sequences, Pr(PHI
end
) probability of PHI-test with recombinant sequences removed at the end of the h-PHI iterations, N
recomb
number of recombinant found with the h-PHI algorithm, Diversity mean pairwise distance among all non-hypermutated taxa measured in 10−3 substitutions/site using a F84 substitution model, Recomb (%) percent recombinants found out of all sequences
