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Table 2 Association of rs6966198 and rs10808739 with HIV-1 infection susceptibility

From: Variants in the CYP7B1 gene region do not affect natural resistance to HIV-1 infection

Sample

Genotype frequency

Allelic frequency

p badditive

p cdominant

p drecessive

CC

CT

TT

CT + TTa

C

T

rs6966198

 Italian HESN

0.648

0.304

0.048

0.35

0.8

0.2

0.112

0.137

0.373

 Italian SP

0.551

0.373

0.076

0.45

0.737

0.263

 Colombian HESN

0.661

0.274

0.065

0.339

0.798

0.202

0.557

0.83

0.309

 Colombian SP

0.681

0.298

0.021

0.319

0.83

0.17

 Peruvian HESN

0.685

0.292

0.023

0.315

0.831

0.169

0.147

0.048

0.399

 Peruvian SP

0.805

0.152

0.043

0.196

0.88

0.12

Sample

Genotype frequency

Allelic frequency

p badditive

p cdominant

p drecessive

GG

GA

AA

G

A

rs10808739

 Italian HESN

0.58

0.33

0.09

0.746

0.254

0.392

0.267

0.961

 Italian SP

0.5

0.412

0.088

0.706

0.294

 Colombian HESN

0.71

0.226

0.064

0.823

0.177

0.831

0.787

0.275

 Colombian SP

0.686

0.294

0.02

0.833

0.167

 Peruvian HESN

0.794

0.198

0.008

0.893

0.107

0.302

0.38

0.389

 Peruvian SP

0.741

0.235

0.024

0.859

0.141

  1. aGenotypic counts (dominant model, as in [7])
  2. bLogistic regression p value for an additive model
  3. cLogistic regression p value for a dominant model
  4. dLogistic regression p value for a recessive model