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Table 1 Samples and sequencing coverage

From: Gene activity in primary T cells infected with HIV89.6: intron retention and induction of genomic repeats

Sample

Infection rate (%)

Reads

Human reads

HIV reads

% HIV

% HIV in infected

Uninfected-1

–

232,450,106

212,391,460

–

–

–

Uninfected-2

–

235,048,212

203,760,783

–

–

–

Infected-1

37.5

234,378,088

199,871,662

10,219,315

4.86

13.0

Infected-2

26

226,078,422

198,436,507

7,322,556

3.56

13.7

Infected-3

21

233,750,850

205,747,441

7,241,973

3.40

16.2

  1. Samples used in this study, their infection rates and sequencing depth. “% HIV in infected” is an estimate based on the assumption that infected and uninfected cells contain equal amounts of mRNA
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Retrovirology

ISSN: 1742-4690

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