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Table 3 Site patterns observed across CpG censored alignments. Patterns were observed at sites classified as one of: ERV (PV); selfish DNA (RM+); or non-repetitive or repetitive but non-selfish (RM-)

From: Orthologous endogenous retroviruses exhibit directional selection since the chimp-human split

Chimp:human Autosomal X-linked
  PV RM+ RM- PV RM+ RM-
A:A 591392 1603551 1145366 26509 83350 43123
A:T 888 2496 1390 38 105 45
A:G 3650 8749 5067 112 335 155
A:C 1104 2678 1593 41 111 46
A:? 0 0 0 0 0 0
T:A 984 2572 1456 28 90 41
T:T 597941 1609580 1151417 26035 87639 43695
T:G 1197 2816 1527 57 109 62
T:C 3636 8534 4949 127 338 172
T:? 0 0 0 0 0 0
G:A 3294 8415 4950 131 389 144
G:T 1143 3034 1688 35 108 51
G:G 450769 1135140 703983 22571 56854 24790
G:C 974 2586 1439 29 105 51
G:? 0 0 0 0 0 0
C:A 1206 2935 1652 26 102 46
C:T 3394 8432 4957 120 328 183
C:G 986 2623 1400 31 91 55
C:C 460550 1128491 698783 18236 56537 25202
C:? 0 0 0 0 0 0
?:A 5 0 2 0 0 0
?:T 0 1 2 0 1 0
?:G 1 0 1 0 1 0
?:C 1 4 0 0 0 0
?:? 0 0 0 0 0 0
total 2123115 5532637 3731622 94126 286593 137861