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Table 2 HLA-TL9 contact table

From: A molecular switch in immunodominant HIV-1-specific CD8 T-cell epitopes shapes differential HLA-restricted escape

 

B0702

B8101

B4201

TL9

VdW

HB/SB

VdW

HB/SB

VdW

HB/SB

Thr1

26

4

27

5

23

4

Pro2

24

0

22

0

21

0

Gln3

28

1

26

1

24

2

Asp4

4

1

6

2

5

1

Gln5

0

0

2

1

0

1

Asn6

15

1

6

0

4

1

Thr7

9

3

5

2

7

0

Met8

23

2

8

0

25

2

Leu9

23

4

15

3

24

4

Total

152

16

117

14

133

15

BSA (Å)

1651.8

 

1726.2

 

1654.2

 

SC (Å)

0.741

 

0.741

 

0.714

 
  1. HB = hydrogen bond, SB = salt bridge, vdW = van der Waals interactions, BSA = buried surface area, SC = surface complementarity.
  2. *A 3.4 Å cut-off was used for HBs and SBs, and a 4 Å cut-off was used for vdW.
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Retrovirology

ISSN: 1742-4690

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