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Table 2 Average amino acid diversity of viral proteins within individual HIV clades (%)

From: An integrated map of HIV genome-wide variation from a population perspective

  Clade # MA CA NC p6 PR RT IN Vif Vpr Tat Rev Vpu/Vpx* GP120 GP41 Nef
HIV-1 Subtype A1 13.07 7.3 7 19.89 5.59 6.44 4.76 13.63 9.86 18.14 16.83 23.04 23.34 13.38 14.64
Subtype B 12.92 4.95 10.83 14.99 8.21 6.04 4.91 14.71 11.29 19.32 18.34 20.04 23.93 15.59 17.79
Subtype C 16.11 5.77 9.39 15.52 6.15 5.84 4.45 10.61 10.64 15.37 16.10 20.21 22.89 14.19 14.96
Subtype D 14.78 5.08 10.85 13.16 7.68 6.98 4.80 11.57 11.74 17.89 15.87 19.40 23.58 13.61 14.42
Subtype F1 13.69 5.71 10.07 16.72 8.84 6.42 4.76 11.04 9.26 17.01 15.70 18.27 20.24 13.39 14.02
Subtype G 17.33 5.54 7.40 17.21 6.60 7.30 4.17 14.36 10.33 15.51 18.39 19.25 23.87 12.98 14.15
Subtype H 18.81 3.61 8.48 17.65 4.55 5.95 5.71 15.46 9.11 19.28 19.80 18.31 21.51 12.33 16.34
CRF01_AE 10.06 3.00 4.92 13.37 4.34 3.75 2.39 9.32 7.97 13.57 13.34 12.80 17.40 9.62 11.78
CRF02_AG 13.57 5.69 3.78 13.63 5.56 5.67 4.06 13.44 7.70 13.58 15.49 16.42 23.37 12.09 15.45
Group N 10.52 6.40 7.06 10.01 5.93 6.78 3.09 11.02 4.87 12.15 12.77 35.01 21.43 9.15 12.64
Group O 14.52 7.45 9.89 22.17 8.20 6.51 5.77 16.17 12.16 21.61 21.25 27.12 28.65 19.35 17.96
HIV-2 Group A 10.15 4.67 11.82 11.02 7.14 6.89 6.78 12.74 22.55 22.59 22.75 10.40 18.55 16.47 21.98
Group B 12.14 3.54 13.15 15.4 5.76 6.4 6.19 12.71 12.66 20.44 15.82 11.45 21.20 15.29 20.59
  1. #: Only HIV groups, subtypes or CRFs with more than 2 genomic sequences are listed.
  2. *: Vpu in HIV-1 and Vpx in HIV-2.