Table 2 Comparison of age of loci among diverse mammal genomes
From: The decline of human endogenous retroviruses: extinction and survival
Species | Common name | Order | Number of young loci (0–6.6my) a | Number of old loci (6.6-31.6my) a | Ratio of young to old loci |
|---|---|---|---|---|---|
Homo sapiens | Human | Primates - Hominoidea | 66 | 2468 | 0.027 |
Pan troglodytes | Chimpanzee | Primates- Hominoidea | 152 | 1745 | 0.087 |
Gorilla gorilla | Western gorilla | Primates- Hominoidea | 138 | 1345 | 0.103 |
Pongo pygmaeus | Bornean orangutan | Primates- Hominoidea | 723 | 1857 | 0.389 |
Nomascus leucogenys | White-cheeked crested gibbon | Primates - Hominoidea | 1113 | 6083 | 0.183 |
Macaca mulatta | Rhesus macaque | Primates - Cercopithecidae | 187 | 1531 | 0.122 |
Papio hamadryas | Hamadryas baboon | Primates- Cercopithecidae | 241 | 1266 | 0.190 |
Callithrix jacchus | Common marmoset | Primates - New World Monkeys | 136 | 605 | 0.225 |
Tarsius syrichta | Philippine tarsier | Primates - tarsiers | 1845 | 1195 | 1.544 |
Microcebus murinus | Gray mouse lemur | Primates - lemurs | 751 | 398 | 1.887 |
Otolemur garnettii | Northern greater galago | Primates - lorises | 255 | 412 | 0.619 |
Echinops telfairi | Small Madagascar hedgehog tenrec | Afrotheria | 185 | 786 | 0.235 |
Bos taurus | Domestic cow | Artiodactyla | 182 | 793 | 0.230 |
Sus scrofa | Domestic pig | Artiodactyla | 19 | 59 | 0.322 |
Vicugna pacos | Alpaca | Artiodactyla | 176 | 96 | 1.833 |
Ailuropoda melanoleuca | Giant Panda | Carnivora | 56 | 80 | 0.700 |
Canis familiaris | Domestic dog | Carnivora | 26 | 119 | 0.218 |
Felis catus | Domestic cat | Carnivora | 167 | 204 | 0.819 |
Tursiops truncatus | Bottlenose dolphin | Cetacea | 20 | 192 | 0.104 |
Myotis lucifugus | Little brown bat | Chiroptera | 308 | 308 | 1000 |
Pteropus vampyrus | Large flying fox | Chiroptera | 106 | 187 | 0.567 |
Erinaceus europaeus | West European hedgehog | Erinaceomorpha | 1667 | 1268 | 1.315 |
Procavia capensis | Cape hyrax | Hyracoidea | 1164 | 870 | 1.338 |
Ochotona princeps | American pika | Lagomorpha | 309 | 277 | 1.116 |
Oryctolagus cuniculus | European rabbit | Lagomorpha | 316 | 268 | 1.179 |
Macropus eugenii | Tammar wallaby | Marsupialia | 54 | 491 | 0.110 |
Monodelphis domestica | Gray short-tailed opposum | Marsupialia | 1162 | 4344 | 0.267 |
Ornithorhynchus anatinus | Duck-billed platypus | Monotremata | 163 | 94 | 1.734 |
Equus caballus | Horse | Perissodactyla | 22 | 159 | 0.138 |
Choloepus hoffmanni | Hoffmanns two-toed sloth | Pilosa | 711 | 1425 | 0.499 |
Loxodonta africana | African bush elephant | Proboscidea | 416 | 1411 | 0.295 |
Cavia porcellus | Guinea pig | Rodentia | 1608 | 1450 | 1.109 |
Dipodomys ordii | Ord's kangaroo rat | Rodentia | 273 | 223 | 1.224 |
Mus musculus | House Mouse | Rodentia | 3045 | 1402 | 2.172 |
Rattus norvegicus | Brown rat | Rodentia | 737 | 897 | 0.822 |
Spermophilus tridecemlineatus | Thirteen-lined ground squirrel | Rodentia | 1271 | 726 | 1.751 |
Tupaia belangeri | Northern treeshrew | Scandentia | 295 | 315 | 0.937 |
Sorex araneus | Common shrew | Soricomorpha | 502 | 395 | 1.271 |
Dasypus novemcinctus | Nine-banded armadillo | Xenarthra | 1631 | 3240 | 0.503 |