Table 1 Recombination testing of sequences from Memphis and Chicago
From: Feline immunodeficiency virus (FIV) envrecombinants are common in natural infections
GARD determined breakpoints | RDP determined recombinants | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
env | S1 | S2 | S3 | S4 | S5 | S6 | S7 | CLADE | MINOR PARENT | MAJOR PARENT |
1-354 | 355-564 | 565-1272 | 1273-1608 | 1609-1868 | 1869-2255 | 2256-2604 | ||||
M1 | B | B | B | B | B | B | B | B | NR | NR |
M2 | B | B | A | A | A | A | A | A/B | P10 | DIXON |
M3 | B | B | B | B | B | B | B | B | NR | NR |
M5A† | B | B | B | B | B | B | B | B | NR | NR |
M5C† | B | B | B | B | B | B | B | B | NR | NR |
M8 | A | B | A | A | A | A | A | A/B | P10 | DIXON |
M10 | B | B | B | B | B | B | B | B | NR | NR |
M11 | B | B | B | B | B | B | B | B | NR | NR |
M12 | B | B | B | B | B | B | B | B | NR | NR |
M14 | B | B | B | B | B | B | B | B | NR | NR |
M15 | B | B | B | B | B | B | B | B | NR | NR |
M16 | B | B | B | B | B | B | B | B | NR | NR |
M20 | A | A | A | A | A | A | B | A/B | P2 | DIXON |
M25 | B | B | B | B | B | B | B | B | NR | NR |
M26 | B | B | B | B | B | B | B | B | NR | NR |
M28 | B | B | B | B | B | B | B | B | NR | NR |
M29 | B | B | B | B | B | B | B | B | NR | NR |
M30 | B | B | B | B | B | B | B | B | NR | NR |
M31 | B | B | A | A | A | A | B | A/B | P10 | DIXON |
M32 | B | B | B | B | B | B | B | B | NR | NR |
M33 | B | B | A | A | A | A | A | A/B | P10 | DIXON |
M41 | B | B | A | A | A | D | B | A/B/D | P10 | DIXON |
M44 | B | B | B | B | B | B | B | B | NR | NR |
M46 | B | B | B | B | B | B | B | B | NR | NR |
M47 | B | B | A | A | A | A | A | A/B | P10 | DIXON |
M48 | A | A | A | A | A | A | B | A/B | P2 | DIXON |
M49 | B | B | B | B | B | B | B | B | NR | NR |
M50 | B | B | A | A | A | A | A | A/B | P10 | DIXON |
P2 | B | B | B | B | B | B | B | B | NR | NR |
P4 | A | B | A | A | A | A | A | A/B | P10 | DIXON |
P5 | A | B | A | A | A | A | A | A/B | P10 | DIXON |
P6 | B | B | B | B | B | B | B | B | NR | NR |
P7 | A | B | A | A | A | A | A | A/B | P10 | DIXON |
P8A† | B | B | A | A | A | A | A | A/B | P10 | DIXON |
P8C† | B | B | B | B | B | B | B | B | NR | NR |
P9 | B | B | B | B | B | B | B | B | NR | NR |
P10 | B | B | B | B | B | B | B | B | NR | NR |
P11 | B | B | B | B | B | B | B | B | NR | NR |
P13 | A | B | A | A | A | A | A | A/B | P10 | DIXON |
P14 | B | B | A | A | A | A | A | A/B | P10 | DIXON |
P15 | B | B | A | A | A | A | A | A/B | P10 | DIXON |
P17 | B | B | B | B | B | B | B | B | NR | NR |
P18 | B | B | A | A | A | A | A | A/B | P10 | DIXON |
P21B† | B | B | B | B | B | B | B | B | NR | NR |
P21C† | B | B | A | A | B | A | A | A/B | P10 | DIXON |
P22 | B | B | B | B | B | B | B | B | NR | NR |