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Figure 2 | Retrovirology

Figure 2

From: Single genome analysis reveals genetic characteristics of Neuroadaptation across HIV-1 envelope

Figure 2

HIV-1 env phylogenies - Varying degrees of intra-patient sequence diversity and compartmentalized virus across disease states. Representative ML trees of SGA sequences from select participants. For all panels, CSF (closed blue squares) and plasma (closed red circles) are shown. aLRT SH-like supports were determined and values over 85% are shown. HIV-1 env sequences with statistical evidence of hypermutation were excluded. All scale bars represent 0.005 nucleotide substitutions per site. HXB2 was used as an outgroup. * = Phylogram with statistical evidence of viral compartmentalization.

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