Table 3 Logistic Regression for predicting transmission based on number of conserved glycosites
From: Application of a case–control study design to investigate genotypic signatures of HIV-1 transmission
Univariate Odd Ratio (95% confidence interval) | p-value | Odds Ratio with subtype interaction (95% confidence interval) | p-value | Test for Homogeneity between subtype, p-value | Wilcoxon Rank-Sum, p-value | ||
|---|---|---|---|---|---|---|---|
PNGs in C1 | PNGs in C1 | ||||||
0 to 1 | Subtype B 0 to 1 | 0.538 | |||||
2 | 2 | 0.78 (0.34, 1.74) | 0.538 | ||||
Subtype C 0 to 1 | 0.661 | ||||||
2 | 2.63 (0.20, 34.07) | 0.46 | 0.45 | ||||
PNGs in C2 | PNGs in C2 | ||||||
0 | Subtype B 0 | 1 | |||||
1 | 0.66 (0.18, 2.38) | 0.522 | 1 | 1.0 (0.14, 7.28) | 1 | ||
Subtype C 0 | 0.403 | ||||||
1 | 0.48 (0.03, 6.74) | 0.587 | 0.587 | ||||
PNGs in C3 | PNGs in C3 | ||||||
0 to 5 | Subtype B 0 to 5 | 0.81 (0.29, 2.24) | 0.68 | 0.669 | |||
6 | 0.76 (0.34, 1.72) | 0.51 | 6 | 1.36 (0.50, 3.70) | 0.551 | ||
7 | 0.79 (0.36, 1.73) | 0.558 | 7 | 0.56 (0.14, 2.26) | 0.411 | ||
8 | 0.58 (0.21, 1.62) | 0.302 | 8 | ||||
Subtype C 0 to 5 | 0.142 | ||||||
6 | 0.86 (0.15, 4.85) | 0.863 | |||||
7 | 0.26 (0.05, 1.37) | 0.113 | |||||
8 | 0.90 (0.11, 7.51) | 0.922 | 0.214 | ||||
PNGs in C4 | PNGs in C4 | ||||||
0 to 3 | Subtype B 0 to 3 | 0.772 | |||||
4 | 0.93 (0.51, 1.71) | 0.818 | 4 | 1.03 (0.41, 2.58) | 0.952 | ||
5 | 079 (0.43, 1.46) | 0.446 | 5 | 1.13 (0.48, 2.65) | 0.782 | ||
Subtype C 0 to 3 | 0.148 | ||||||
4 | 0.87 (0.25, 2.96) | 0.818 | |||||
5 | 0.23 (0.05, 1.09) | 0.064 | 0.107 | ||||
PNGs in C5 | PNGs in C5 | ||||||
0 | Subtype B 0 | 0.518 | |||||
1 | 1.02 (0.25, 4.23) | 0.974 | 1 | 0.49 (0.09, 2.78) | 0.423 | ||
2 | 0.96 (0.22, 4.06) | 0.951 | 2 | 0.44 (0.06, 3.16) | 0.413 | ||
Subtype C 0 | 0.951 | ||||||
1 | |||||||
2 | 0.532 | ||||||