Skip to main content

Table 1 Primers used for PCR amplification analysis

From: FIV establishes a latent infection in feline peripheral blood CD4+ T lymphocytes in vivo during the asymptomatic phase of infection

Primer name

Sequence

FIV genomic position *

Assay

feline GAPDH for

5' AAA TTC CAC GGC ACA GTC AAG

NA

Feline GAPDH QT PCR

feline GAPDH rev

5' TGA TGG GCT TTC CAT TGA TGA

NA

Feline GAPDH QT PCR

18s rRNA for

5' GTA ACC CGT TGA ACC CCA TT

NA

Feline 18s rRNA

18s rRNA rev

5' CCA TCC AAT CGG TAG TAG CG

NA

Feline 18s rRNA

FIV QT gag for

5' TAG CCC TTG ACC CAA AAA TG

1067

FIVgag QT PCR

FIV QT gag rev

5' ATT GGC CGA AAA AGC TGT AA

1167

FIVgag QT PCR

FIV Gag leader for

5' GTT GGC GCCCGA ACA GGG

354

FIV gag sequencing

Gag circle rev

5' GTA GAT GGT CTG GTG TCT AAT CCC A

989

FIV gag sequencing

FIV U5 rev

5' TGC GAA GTC TTC GGC CCG GAC TCC G

338

FIV LTR sequencing

FIV env for

5' TGG GAG TCC TCT GAC CGA GA

9043

FIV LTR sequencing + CJ A and B

FIV gag circle rev3

5' GGT TTC ACT TTC CTA GCC TGC TC

403

CJ B

FIV gag rev

5' TGA GTC AGC CCT ATC CCC ATT A

1345

CJ A

FIV u5 for

5' CCT GTC GTG TAT CTG TGT AAT CTT TTC TAA C

290

CJ C

FIV u3 rev

5' TGG AAC AAA ATC TAC GTC ATC GG

155

CJ C

  1. QT PCR = real time PCR; CJ = circle junctions PCR; NA = not applicable
  2. * 5' position of FIV primer