HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency

Retrovirology

Table 1 Data used for analysis of endogenous retroviruses

Data type GEO accession number	Factor	Cell type or tissue	Reference
Human
ChIPSeq, GSE16256	H3K4me3, H3K27me3	H1, H9, I3, iPS, IMR90	[20]
ChIPSeq, GSE22499	H3K4me3	BG01/03, WIBR1/2/7, hiPSA6/C1, Fibroblast	[21]
ChIPSeq, GSE15353	H3K4me3	HeLa w/o IFN	[22]
ChIPSeq, GSE19465	H3K4me3	hiPS-11a/18c/15b/20b, duodenum mucosa, BM-MSC,smooth muscle, adult liver, fetal lung, fetal brain, CD34, CD3, CD15, CD19, Pancreatic Islets	[23]
ChIPSeq, GSE20650	NANOG,OCT4, KLF4	H1	[24]
ChIPSeq, GSE18292	SOX2	H1	[25]
RNASeq, GSE23316		H1, HeLa, K562	UCSC ENCODE Project
RNASeq, GSE20301		H1, differentiated H1	[26]
Mouse
ChIPSeq, GSE22075	Mouse H3K4me3	ES, LSK cells	[27]
ChIPSeq, GSE12241	Mouse H3K4me3	ES, MEF	[28]

ISSN: 1742-4690