Patient | Clade B consensus epitope sequence(s) | Autologous epitope sequence(s)1 | |||||
---|---|---|---|---|---|---|---|
MM7 | HLA-A3 RLRPGGKKK (Gag p17 20-28) | d23 RLRPGGKKK | d87 RLRPGGKKK | d553 RLRPGGKKK | d766 RLRPGGKKR | d934 RLRPGGKKR | Â |
 | HLA-A3 QVPLRPMTYK (Nef 73-82) | QVPLRPMTYK | QVPLRPMT / NYK2 | QVPLRPMT / NYK | QVPL/VRPMT / NYK | QVPL / VGPMTYK |  |
MM9 | HLA-B8 FLKEKGGL (Nef 90-97) | d26 FLKEKGGL | d54 FLKEKGGL | d105 FLKEKGGL | d273 FLKEKGGL | d343 FLKEKGGL | Â |
 | HLA-Cw07 KRQDILDLWVY (Nef 105-115) | KRQDILDLWVY | KRQD/EILDLWVY | KRQD/EILDLWVY | RRQEILDLWVY | RRQEILDLWVY |  |
MM12 | HLA-A3 QVPLRPMTYK (Nef 73-82) | d16 QVPLRPMTYK | d40 QVPLRPMTYK | d139 QVPLRPMTYK | d230 QVPLRPMTYK | d321 QVPLRPMTYK | d487 QVPLRPMTYK |
 | HLA-A3 QIYAGIKVK (RT 269-277) | QIYAGIKVK | QIYAGIKVK | QIYAGIKVR | QIYAGIKVR | QIYAGIKVR | QIYAGIKVR |
MM13 | HLA-B8 FLKEKGGL (Nef 90-97) | d16 FLKEKGGL | d45 FLKEKGGL | d96 FLKEK/EGGL | d275 FLKEEGGL | d544 FLKEEGGL | Â |
 | HLA-B57 KAFSPEVIPMF (Gag p24 30-40) | KAFSPEVIPMF | KAFSPEVIPMF | KAFSPEVIPMF | KAFSPEVIPMF | KAFSPEVIPMF |  |
 | HLA-B57 HTQGYFPDWQ (Nef 116-125) | HTQGYFPDWQ | HTQGYFPDWQ | HTQGYFPDWQ | HTQGYFPDWQ | HTQGYFPDWQ |  |
MM26 | HLA-B7 KPQVPLRPMTY (Nef 71-81) | d55 KPQVPLRPMTY | d169 RPQVPLRPMTY | d253 RPQVPLRPMTY | d415 RPQVPLRPMTY | Â | Â |
 | HLA-A2 YTAFTIPSI (RT 127-135) | YTAFTIPSI | YTAFTIPSI/T | YTAFTIPST | YTAFTIPST |  |  |
MM27 | HLA-A2 YTAFTIPSI (RT 127-135) | d28 YTAFTIPSV | d53 YTAFTIPSV | d81 YTAFTIPSV | d299 YTAFTIPSV/I | d466 YTAFTIPSI | Â |
MM28 | HLA-A11 AAVDLSHFLK (Nef 83-92) | d9 AAVDLSHFLK | d34 AALDLSHFLK | d198 AALDLSHFLK | d405 GALDLSHFLK | Â | Â |
MM33 | HLA-B44 EEMNLPGRW (Protease 34-42) | d12 EEMNLPGRW | d96 EDMNLPGRW | d201 EDMNLPGRW | d391 EDMNLPGRW | Â | Â |
MM34 | HLA-B35 DPNPQEVVL (Gp160 78-86) | d17 DPNPQEVVL | d45 DPNPQEVVL | d192 DPN / SPQEVVL | d353 DPN/SPQEVVL | Â | Â |
 | HLA-A24 RYPLTFGWCF (Nef 134-143) | RYPLTFGWCF | RYPLTFGWCF | RFPLTFGWCF | RFPLTFGWCF |  |  |
MM39 | HLA-A3 RLRPGGKKK (Gag p17 20-28) | d11 RLRPGGKKK | d92 RLRPGGKKK | d179 RLRPGGKKK | d358 RLRPGGKKK | Â | Â |
 | HLA-A3 QVPLRPMTYK (Nef 73-82) | QVPLRPMTYK | QVPLRPMTYK | QVPLRPMTYK | QVPLRPMTYK |  |  |
MM43 | HLA-B40 KEKGGLEGL (Nef 92-100) | d21 KEKGGLEGL | d101 KEKGGLEGL | d228 KEKGGLEGL | d368 KEKGGLEGL | Â | Â |
 | HLA-A2 ALQDSGLEV (RT 485-493) | ALQDSGLEV | ALQDSGLEV | ALQDSGLEV | ALQDSGLEV |  |  |
 | HLA-A2 LEWRFDITL (Nef 181-189) | LEWRFDITL | LEWRFDITL | LE/Q/P/AWRFDITL | LAWRFDITL |  |  |
MM45 | HLA-A3 RLRPGGKKK (Gag p17 20-28) | d22 RLRPGGKKK | d87 RLRPGGKKK | d213 RLRPGGKKK | Â | Â | Â |
MM46 | HLA-A2 LVWKFDSRL (Nef 181-189) | d5 LVWKFDSRL | d56 LVWKFDSRL | d175 LVWKFDSRL | d530 LVWKFDSRL | Â | Â |
 | HLA-A11 RLAFHHVAR (Nef 188-196) | RLAFHHVAR | RLAFHHVAR | RLAFHHAAR | RLAFHHAAR |  |  |
MM47 | HLA-B14 ERYLKDQQL (Gp160 584-592) | d28 ERYLKDQQL | d57 ERYLKDQQL | d84 ERYLQDQQL | d113 ERYLKDQQL | d217 ERYLQDQQL | d402 ERYLQDQQL |
 | HLA-A24 RYPLTFGWCY (Nef 134-143) | RYPLTFGWCY | RFPLTFGWCY | RFPLTFGWCY | RFPLTFGWCY | RFPLTFGWCY | RFPLTFGWCY |
MM48 | HLA-B27 KRWIIMGLNK (Gag p24 131-140) | d22 KRWIIMGLNK | d50 KRWIIMGLNK | d113 KRWIIMGLNK | d204 KRWIIM/LGLNK | Â | Â |
 | HLA-A24 RYPLTFGWCF (Nef 134-143) | RYPLTFGWCF | RYPLTFGWCF | RYPLTFGWCF | RYPLTFGWCF |  |  |
MM51 | HLA-B13 RQANFLGKI (Gag p2p7p1p6 66-74) | d18 RQANFLGKI | d86 RQANFLGKI | d207 RQANFLGKI | d389 RQANFLGKI | Â | Â |
MM55 | HLA-B14 DRFYKTLRAEQ (Gag p24 166-176) | d31 DRFYKTLRAEQ | d94 DRFYKTLRAEQ | d227 DRFYKTLRAEQ | d347 DRFYKTLRAEQ | Â | Â |
 | HLA-B14 ERYLKDQQL (Gp160 584-592) | ERYLKDQQL | ERYLKDQQL | ERYLKDQQL | ERYLKDQQL |  |  |
 | Unknown RDISGWILSTY (Rev 53-63) | RDISGWILSTY | RDISGWILSTY | RDISGWILSTY | RDISGWILST/AY |  |  |
MM56 | HLA-B57 TSTLQEQIGW (Gag p24 108-117) | d14 TSTLQEQIGW | d75 TSTLQEQIGW | d186 TSNLQEQIGW | d375 TSNLQEQIGW | Â | Â |