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Table 7 Comparison of MLV sequences amplified from patient samples [16] with mouse genomic sequences

From: No evidence of XMRV in prostate cancer cohorts in the Midwestern United States

Sequence

Length (nt)

Closest relative

GenBank no.

Similarity

Nucleotide difference

HM630557

319

Mouse endogenous retrovirus

M26006

99%

4/310

HM630558

698

Mus musculus BAC clone RP23-115O21

AC163617

99%

7/698

HM630559

698

Mouse DNA sequence from clone RP23-131N18

AL772224

99%

1/697

HM630560

697

Mouse endogenous retrovirus

M26005

99%

3/698

HM630561

339

Mouse DNA sequence, clone CH29-187G15

CU407131

99%

6/339

HM630562

698

Mus musculus BAC clone RP23-115O21

AC163617

99%

5/697

  1. Patient amplified MLV sequences were used as a BLAST query to identify their closest relative. The accession numbers of the mouse genomic sequences identified are shown as are the number of nucleotide differences between the patient amplified sequence and their nearest relatives in the mouse genome.