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Table 4 Number of enriched gene sets in pairwise comparisons for CD4+ and CD8+ T cells using gene set enrichment analysis (at level of FDR < 0.05 and FDR < 0.1)

From: Genome-wide analysis of primary CD4+ and CD8+ T cell transcriptomes shows evidence for a network of enriched pathways associated with HIV disease

FDR < 0.05 CD4 CD8 CD4 and CD8
Enriched gene sets up down up down up down
VIRvsBDL 19 3 29 2 5 2
VIRvsLTNP 27 2 8 0 6 0
BDLvsLTNP 20 7 0 1 0 1
FDR < 0.1 CD4 CD8 CD4 and CD8
Enriched gene sets up down up down up down
VIRvsBDL 57 3 53 2 18 2
VIRvsLTNP 51 4 20 0 13 0
BDLvsLTNP 31 34 0 5 0 3
  1. Up: up-regulation; down: down-regulation; vs: versus; CD4 and CD8: gene sets enriched in both CD4+ and CD8+ T cells in the same paired comparison.