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Figure 2 | Retrovirology

Figure 2

From: HIV-1 subtype C envelope characteristics associated with divergent rates of chronic disease progression

Figure 2

Maximum Likelihood trees of SGA-derived full-length env sequences from Progressors and Slow progressors. Figure 2A Subtype tree of consensus sequences for slow progressors entry () and exit () and progressors entry (■) and exit (□) time-points. Subtype reference strains were obtained from the Los Alamos database (http://www.hiv.lanl.gov/content/sequence/NEWALIGN/align.html). The tree was rooted with Group O as the outgroup. Figures 2B to 2E represent maximum likelihood trees for the slow progressor sequences and Figures 2F to 2I represent trees for the progressor sequences. All trees were drawn in Paup* using the appropriate substitution model. Bootstrap support from 1000 bootstrap resamplings is indicated by . Only values >70% are shown. The scale bar is shown at the bottom of figure 2A is 0.1 and for figures 2B-2I the scale bar is 0.005. The mean study entry and exit intra-patient nucleotide diversity and the standard error of (SE) for both the groups are shown in the tables below the individual trees.

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