Figure 1
From: The role of recombination in the emergence of a complex and dynamic HIV epidemic
Genome maps of all near full-length sequences composed exclusively of subtypes A and G. AG recombinants were classified into 4 groups and 22 URFs. A group is defined as a set of sequences (>1) that have identical breakpoints. The genomic compositions and breakpoint positions were computed by the jpHMM program as described in Materials and Methods. The 22 URFs were originally assigned as CRF02 in 15 cases and different AG recombinants in 7 cases. They were sampled in CM (n = 10), GH (3), NG (2), SN (2), BE (1), CD (1), KE (1), SE (1), and US (1). "Sampling Country" is abbreviated by ISO standard 2-letter codes [AR: Argentina. BE: Belgium, BO: Bolivia, BR: Brazil, CD: Dem Rep of the Congo, CL: Chile, CM: Cameroon, CN: China, EC: Ecuador, ES: Spain, FR: France, GH: Ghana, KE: Kenya, MM: Myanmar. NG: Nigeria, SE: Sweden, SN: Senegal, US: United States, UY: Uruguay, UZ: Uzbekistan, VE: Venezuela.] "Literature Assignment" refers to the legacy HIV database/literature-assigned subtypes. In parenthesis are the numbers of sequences.