Table 3 PTLV evolutionary rate and time-scale calculated with a Bayesian relaxed molecular clock using 1st + 2nd codon positions of concatenated gag-pol-env-tax genes and tax only1.
Clade | gag-pol-env-tax | tax(630-bp) |
|---|---|---|
Mean Posterior Substitution Rate2 | 6.29 × 10-7 (3.29 × 10-7 - 9.53 × 10-7) | 5.36 × 10-7 (3.21 × 10-7 - 8.1 × 10-7) |
PTLV root | 323,887 (147,042 - 529,980) | 191,759 (88,914 - 299,436) |
MarB43/PTLV-1 | 102,708 (58,833 - 109,552) | 77,259 (45,899 - 118,645) |
PTLV-13 | 53,896 (38,355 - 76,651) | 49,211 (39,783 - 59,155) |
HTLV-4/PTLV-2 | 242,627 (77,653 - 305,591) | 110,122 (46,324 - 180,712) |
PTLV-2 | 107,191 (41,349 - 182,273) | 67,460 (29,660 - 111,773) |
STLV-2 | 42,350 (11,650 - 87,100) | 31,018 (8,744 - 56,742) |
HTLV-2 | 25,346 (14,419 - 40,104) | 20,982 (13,591 - 27,792) |
HTLV-2a, b4 | 21,492 (14,426 - 28,212) | 20,947 (13,703 - 27,783) |
PTLV-3 | 120,574 (52,894 - 201,260) | 75,795 (34,342 - 127,209) |
PTLV-3a/3b | 54,953 (26,648 - 102,445) | 41,524 (17,149 - 68,097) |
PTLV-3c/3d | ND5 | 18,452 (4,386 - 36,666) |
PTLV-3d/3a+3b | 115,117 (52,822 - 200,926) | ND |