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Table 2 Percent nucleotide and amino acid identity of STLV-3d(Cmo8699AB) with other prototypical PTLVs1

From: Genetic characterization of the complete genome of a highly divergent simian T-lymphotropic virus (STLV) type 3 from a wild Cercopithecus mona monkey

  PTLV-3 (subtype A) PTLV-3 (subtype B)
  STLV-3
(TGE-2117)
STLV-3 (PH969) STLV-3 (CTO604) STLV-3 (NG409) STLV-3
(PPA-F3)
HTLV-3
(Pyl43)
HTLV-3 (2026ND)
Genome 76.9 76.8 77.0 76.9 77.1 77.3 76.8
LTR 72.0 70.7 74.1 73.4 73.6 74.4 72.5
gag 79.6 (89.0) 78.9 (88.6) 79.6 (89.0) 79.2 (88.1) 79.9 (89.0) 79.6 (88.8) 78.6 (87.9)
   p19 (87.0) (88.0) (87.9) (85.9) (87.0) (87.9) (87.0)
   p24 (95.5) (93.9) (95.5) (96.5) (96.0) (96.0) (93.9)
   p15 (83.1) (83.1) (83.1) (80.7) (81.9) (80.2) (83.1)
pro 70.9 (76.6) 72.2 (76.0) 73.1 (77.1) 72.7 (76.6) 72.0 (77.1) 72.4 (76.6) 73.3 (78.9)
pol 76.7 (82.3) 76.7 (82.7) 76.5 (82.0) 76.3 (82.2) 76.1 (82.5) 76.7 (82.2) 76.0 (80.9)
env 76.3 (84.3) 76.1 (83.1) 76.1 (83.2) 77.1 (84.9) 77.1 (85.1) 76.3 (83.6) 77.5 (84.9)
   SU (80.4) (78.5) (79.5) (80.3) (81.0) (79.5) (81.0)
   TM (91.5) (91.5) (89.8) (90.9) (92.6) (90.9) (92.0)
rex 89.1 (72.7) 88.7 (71.4) 87.7 (68.9) 88.5 (72.0) 87.9 (70.8) 87.9 (69.6) 87.2 (70.2)
tax 84.6 (90.2) 84.6 (88.8) 83.5 (89.1) 83.7 (89.1) 83.7 (88.8) 83.9 (89.7) 82.9 (87.6)
  1. 1 Complete genomes were not available for STLV-3 subtype C viruses for comparison; amino acid identities are in parentheses.