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Table 2 Differentially expressed virus-related sequence from cDNA microarray analysis

From: Proviral integrations and expression of endogenous Avian leucosis virus during long term selection for high and low body weight in two chicken lines

Probe ID GeneBank ID Gene annotation from the best hit/Domain Fold difference of array expression (LWS/HWS) Nucleotide BLAST
    0 d male 0 d female 56 d male 56 d female EST length Hit length (hit/total) Similarity (%)
RJA064A11.ab1 CN220264 ALV ev-21 and its integration site 30.8 20.6 23.8 21.5 377 305/2734 97.7
RDA-81 NA ALV ADOL-7501, proviral sequence 20.0 12.9 10.4 11.2 210 207/7612 96.2
RJA002E06 CN216922 ALV strain ev-3/Avian gp85 18.4 13.6 14.6 14.4 757 757/5842 99.1
WLA044E07.ab1 CN223892 ALV strain ev-3, complete genome 8.3 5.7 6.8 6.2 588 409/5842 100
WLA070B07.ab1 CN230959 ALV strain ev-3, complete genome 6.9 4.9 7.8 6.9 368 153/5842 100
VeFi2.66.C3* CN221614 Myeloblastosis-assoc. virus genes/Avian gp85 2.0 1.9 2.0 1.9 2567 2120/7704 92.3
WLA097G09.ab1 CN234473 ALV (strain RAV 7) 3' noncoding region 2.5 2.3 -. 2.1 326 274/358 94.5
WLA043C12.ab1 CN222802 ALV strain ev-3, complete genome 1.6 - 1.6 1.6 454 451/5842 96.3
WLA019C03.ab1 CN220591 ALV strain ev-6 envelope polyprotein - 4.3 4.8 4.8 685 151/2720 96.7
RDA-69 NA ALV strain ev-1, complete genome - - - 2.5 185 170/7525 98.2
  1. The gene annotation and BLAST result was collected from http://www.sbc.su.se/~arve/chicken[23, 24]. NA, GeneBank ID is not available. VeFi2.66.C3* had the best hit in Myeloblastosis-associated virus genes, however, BLAST result with protein sequences from SwissProt and TrEMBL showed the best hit on env protein of ALV.