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Table 2 Differentially expressed virus-related sequence from cDNA microarray analysis

From: Proviral integrations and expression of endogenous Avian leucosis virus during long term selection for high and low body weight in two chicken lines

Probe ID

GeneBank ID

Gene annotation from the best hit/Domain

Fold difference of array expression (LWS/HWS)

Nucleotide BLAST

   

0 d male

0 d female

56 d male

56 d female

EST length

Hit length (hit/total)

Similarity (%)

RJA064A11.ab1

CN220264

ALV ev-21 and its integration site

30.8

20.6

23.8

21.5

377

305/2734

97.7

RDA-81

NA

ALV ADOL-7501, proviral sequence

20.0

12.9

10.4

11.2

210

207/7612

96.2

RJA002E06

CN216922

ALV strain ev-3/Avian gp85

18.4

13.6

14.6

14.4

757

757/5842

99.1

WLA044E07.ab1

CN223892

ALV strain ev-3, complete genome

8.3

5.7

6.8

6.2

588

409/5842

100

WLA070B07.ab1

CN230959

ALV strain ev-3, complete genome

6.9

4.9

7.8

6.9

368

153/5842

100

VeFi2.66.C3*

CN221614

Myeloblastosis-assoc. virus genes/Avian gp85

2.0

1.9

2.0

1.9

2567

2120/7704

92.3

WLA097G09.ab1

CN234473

ALV (strain RAV 7) 3' noncoding region

2.5

2.3

-.

2.1

326

274/358

94.5

WLA043C12.ab1

CN222802

ALV strain ev-3, complete genome

1.6

-

1.6

1.6

454

451/5842

96.3

WLA019C03.ab1

CN220591

ALV strain ev-6 envelope polyprotein

-

4.3

4.8

4.8

685

151/2720

96.7

RDA-69

NA

ALV strain ev-1, complete genome

-

-

-

2.5

185

170/7525

98.2

  1. The gene annotation and BLAST result was collected from http://www.sbc.su.se/~arve/chicken[23, 24]. NA, GeneBank ID is not available. VeFi2.66.C3* had the best hit in Myeloblastosis-associated virus genes, however, BLAST result with protein sequences from SwissProt and TrEMBL showed the best hit on env protein of ALV.