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Table 1 List of 62 HIV-1 reference sequences (including 44 non-recombinant sequences, grouped by subtypes, and 18 circulating recombinant forms (CRFs) included in the study (2005 subtype reference set of the HIV sequence database, Los Alamos National Laboratory).

From: Discovery of novel targets for multi-epitope vaccines: Screening of HIV-1 genomes using association rule mining

Subtype Sequence name Subtype Sequence name
A1 A1.KE.94.Q23_17.AF004885 J J.SE.93.SE7887.AF082394
  A1.SE.94.SE7253.AF069670   J.SE.94.SE7022.AF082395
  A1.UG.92.92UG037.U51190 K K.CD.97.EQTB11C.AJ249235
  A1.UG.98.98UG57136.AF484509   K.CM.96.MP535.AJ249239
A2 A2.CD.97.97CDKTB48.AF286238 O O.BE.87.ANT70.L20587
  A2.CY.94.94CY017_41.AF286237   O.CM.91.MVP5180.L20571
B B.FR.83.HXB2-LAI-IIIB-BRU.K03455   O.CM.98.98CMU2901.AY169812
  B.NL.00.671_00T36.AY423387   O.SN.99.SEMP1300.AJ302647
  B.TH.90.BK132.AY173951 N N.CM.02.DJO0131.AY532635
  B.US.98.1058_11.AY331295   N.CM.95.YBF30.AJ006022
C C.BR.92.BR025-d.U52953   N.CM.97.YBF106.AJ271370
  C.ET.86.ETH2220.U46016   
  C.IN.95.95IN21068.AF067155 CRFs 01_AE.TH.90.CM240.U54771
  C.ZA.04.SK164B1.AY772699   02_AG.NG.-.IBNG.L39106
D D.CD.83.ELI.K03454   03_AB.RU.97.KAL153_2.AF193276
  D.CM.01.01CM_4412HAL.AY371157   04_CPX.CY.94.CY032.AF049337
  D.TZ.01.A280.AY253311   05_DF.BE.-.VI1310.AF193253
  D.UG.94.94UG114.U88824   06_CPX.AU.96.BFP90.AF064699
F1 F1.BE.93.VI850.AF077336   07_BC.CN.97.CN54.AX149771
  F1.BR.93.93BR020_1.AF005494   08_BC.CN.97.97CNGX_6F.AY008715
  F1.FI.93.FIN9363.AF075703   09_CPX.GH.96.96GH2911.AY093605
  F1.FR.96.MP411.AJ249238   10_CD.TZ.96.96TZ_BF061.AF289548
F2 F2.CM.02.02CM_0016BBY.AY371158   11_CPX.GR.-.GR17.AF179368
  F2.CM.95.MP255.AJ249236   12_BF.AR.99.ARMA159.AF385936
  F2.CM.95.MP257.AJ249237   13_CPX.CM.96.1849.AF460972
  F2.CM.97.CM53657.AF377956   14_BG.ES.99.X397.AF423756
G G.BE.96.DRCBL.AF084936   15_01B.TH.99.99TH_MU2079.AF516184
  G.KE.93.HH8793_12_1.AF061641   16_A2D.KR.97.97KR004.AF286239
  G.NG.92.92NG083.U88826   18_CPX.CM.97.CM53379.AF377959
  G.SE.93.SE6165.AF061642   19_CPX.CU.99.CU38.AY588970
H H.BE.93.VI991.AF190127   
  H.BE.93.VI997.AF190128   
  H.CF.90.056.AF005496   
  1. The last number in each sequence name is the GenBank accession number.