Table 1 Animal Information and analysis using the acute HIV-1 infection model.
From: Nef gene evolution from a single transmitted strain in acute SIV infection
Animal Index -sample date | viral load (copies/ml) | Number of Sampled Sequences | Divergence | Diversity | Variance | Max. HD | Sequence Identity | Estimated days post infection (95% CIs) | χ2goodness of fit P value |
|---|---|---|---|---|---|---|---|---|---|
r00065-day4 | 18,600 | 31 | 0.016% | 0.033% | 0.027% | 2 | 87.1% | 14 [4–35] | 0.79 |
r00065-day7 | 1,660,000 | 41 | 0.018% | 0.037% | 0.043% | 3 | 87.8% | 16 [6–34] | 0.52 |
r00065-day11 | 90,800,000 | 50 | 0.013% | 0.025% | 0.022% | 2 | 90.0% | 11 [4–25] | 0.82 |
r00065-day18 | 39,750,000 | 31 | 0.0081% | 0.016% | 0.015% | 2 | 93.5% | 7 [1–25] | 0.93 |
r98018-day7 | 20,000 | 33 | 0.0077% | 0.015% | 0.014% | 2 | 93.9% | 7 [1–23] | 0.93 |
r98018-day14 | 12,380,625 | 67 | 0.026% | 0.052% | 0.055% | 4 | 82.1% | 22 [12–37] | 0.70 |
r98018-day21 | 1,391,000 | 69 | 0.016% | 0.033% | 0.057% | 5 | 91.3% | 14 [7–27] | 0.86 |