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Figure 3 | Retrovirology

Figure 3

From: Nef gene evolution from a single transmitted strain in acute SIV infection

Figure 3

Viral load kinetics and the dynamics of divergence, diversity, variance, maximum HD, and sequence identity from homogeneous SIV infection. A. Viral load kinetics of animal r00065 (r65, black) and animal r98018 (r98, red). Animal r00065, which was infected by intravenous injection, displays a greater level of viral replication in comparison with animal r98018 which was infected by intrarectal inoculation. Dynamics of divergence (B), diversity (C), variance (D), maximum HD (E), and sequence identity (F) of nef sequences from animals r00065 (black) and r98018 (red). Each average value of simulated quantity from 103 simulations is represented with a brown line [2]. We sampled 31 sequences at a given time point in each run.

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