Table 1 Patterns of multiple infection in the 23 individuals infected with two or more strains.
From: Multiple-infection and recombination in HIV-1 within a longitudinal cohort of women
Pattern | IDU | Patient ID | Gene | Visit detected | Sampled Visits | No. of Visits Persisted | Max. No. of Possible Visits | Initial Prop. |
|---|---|---|---|---|---|---|---|---|
Co-infected at first visit followed by extinction | 0 | 21 | pol | 1 | 1,5 | 1 | 2 | 0.80 |
| Â | 0 | 44 | env | 1 | 1,6 | 1 | 2 | 0.80 |
| Â | 0 | 8 | env | 1 | 1,4,11 | 1 | 3 | 0.20 |
| Â | 1 | 12 | env | 1 | 1,3,5 | 1 | 3 | 0.20 |
| Â | 1 | 49 | pol | 1 | 1,5 | 1 | 2 | 0.40 |
| Â | 1 | 50 | pol | 1 | 1,2,8 | 1 | 3 | 0.40 |
| Â | 1 | 54 | env | 1 | 1, 7 | 1 | 2 | 0.20 |
| Â | 1 | 1* | env* | 1 | 1,10 | 1 | 2 | 0.30 |
| Â | 1 | 1* | env* | 1 | 1,10 | 1 | 2 | 0.20 |
| Â | 0 | 58* | env* | 1 | 1,3 | 1 | 2 | 0.20 |
Co-infected at first visit followed by no detection | 0 | 58* | env* | 1,3 | 1,3 | 2 | 2 | 0.20 |
| Â | 1 | 19 | env | 1,2,10 | 1,2,10 | 3 | 3 | 0.60 |
Superinfected after first visit followed by no detection | 0 | 23 | env | 4 | 3,4,6 | 1 | 2 | 0.90 |
| Â | 0 | 38 | pol | 5,8 | 3,5,8,9 | 2 | 3 | 0.20 |
| Â | 0 | 10* | env* | 3 | 1,3,5,7 | 1 | 3 | 0.60 |
| Â | 0 | 10* | env* | 3 | 1,3,5,7 | 1 | 3 | 0.30 |
| Â | 0 | 10* | pol | 3 | 1,3 | 1 | 1 | 0.57 |
| Â | 1 | 14 | env | 9 | 1,9,11 | 1 | 2 | 0.50 |
| Â | 1 | 2 | pol | 3 | 1,3,6 | 1 | 2 | 0.22 |
initial infection displaced by a recombinant | 0 | 39 | pol | 7 | 1,7 | 1 | 1 | 1.00 |
| Â | 0 | 43 | pol | 3 | 2,3 | 1 | 1 | 1.00 |
| Â | 0 | 45 | env | 10 | 1,5,6,10 | 1 | 1 | 1.00 |
Superinfected at last visit | 0 | 15 | pol | 4 | 1,4 | 1 | 1 | 0.20 |
| Â | 0 | 20 | pol | 9 | 1,4,9 | 1 | 1 | 0.20 |
| Â | 1 | 13 | pol | 7 | 1, 7 | 1 | 1 | 0.50 |
| Â | 1 | 17 | env | 6 | 1,6 | 1 | 1 | 0.80 |
| Â | 1 | 55 | pol | 2 | 1,2 | 1 | 1 | 0.20 |
| Â | Â | Â | Â | Â | Average: | 1.148 | 1.963 | 0.47 |